Co-expression analysis

Gene ID	Contig9550_at
Gene name
Homology with Arabidopsis	Similar to At4g33690: unknown protein (HF=3e-1)
Module size	19 genes
NF	0.43
%ile	60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.1	0.95	Contig9550_at	Contig9550	-	-	3e-1	At4g33690	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.96	Contig4849_s_at	Contig4849	-	-	1e-4	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.95	HA26O09r_s_at	HA26O09r	-	-	6e+0	At3g52780	PAP20	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig2832_s_at	Contig2832	-	-	6e+0	At4g36530	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig10536_at	Contig10536	-	-	3e-2	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.96	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	rbah36l17_s_at	rbah36l17	-	-	7e-30	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.96	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig5228_s_at	Contig5228	-	-	2e-17	At1g10210	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig4350_s_at	Contig4350	-	-	2e-85	At2g42790	CSY3 (citrate synthase 3)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig4296_at	Contig4296	-	-	5e-38	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig3263_at	Contig3263	-	-	9e-38	At4g20360	ATRABE1B (ARABIDOPSIS RAB GTPASE HOMOLOG E1B)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig3403_s_at	Contig3403	-	-	2e-2	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig3967_at	Contig3967	-	-	6e-16	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig5893_at	Contig5893	-	-	1e-52	At1g04170	EIF2 GAMMA	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.97	Contig6751_at	Contig6751	-	-	1e+0	At3g04990	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig6217_at	Contig6217	-	-	5e-86	At5g19820	emb2734 (embryo defective 2734)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.8	93.1	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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