Co-expression analysis

Gene ID	Contig9472_at
Gene name
Homology with Arabidopsis	Similar to At1g70300: KUP6 (HF=2e-5)
Module size	6 genes
NF	0.67
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.85	Contig9472_at	Contig9472	-	-	2e-5	At1g70300	KUP6	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.88	Contig12939_at	Contig12939	-	-	4e-2	At1g44760	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig1474_at	Contig1474	-	-	1e-41	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.93	Contig16209_at	Contig16209	-	-	2e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig2592_at	Contig2592	-	-	1e-17	At5g10860	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.86	Contig11973_at	Contig11973	-	-	1e+0	At1g65350	UBQ13	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.6	92.3	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.6	92.3	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.5	91.9	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.5	91.9	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.4	91.4	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
2.3	90.9	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.3	90.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
2.3	90.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage