Co-expression analysis

Gene ID	Contig9449_s_at
Gene name
Homology with Arabidopsis	Similar to At2g27350: OTU-like cysteine protease family protein (HF=3e-18)
Module size	6 genes
NF	0.47
%ile	65.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	55.2	0.96	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.97	rbaal22m07_at	rbaal22m07	-	-	2e-1	At1g06440	ubiquitin thiolesterase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.3	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.7	95.5	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.6	95.3	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.5	95.1	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.3	94.6	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
3.0	93.8	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.0	93.8	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.6	92.3	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage