Co-expression analysis

Gene ID Contig9429_s_at
Gene name
Homology with ArabidopsisSimilar to At2g37650: scarecrow-like transcription factor 9 (SCL9) (HF=6e-5)
Module size 7 genes
NF 0.49
%ile 68.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.95Contig9429_s_atContig9429--6e-5At2g37650scarecrow-like transcription factor 9 (SCL9)O.I.H.G.S.X.
0.5975.80.95Contig4299_atContig4299--3e-7At5g05110cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.
0.5674.30.95Contig8748_atContig8748--5e+0At2g16740UBC29 (ubiquitin-conjugating enzyme 29)O.I.H.G.S.X.
0.4661.00.96Contig10824_atContig10824--7e-2At5g11350endonuclease/exonuclease/phosphatase family proteinO.I.H.G.S.X.
0.4053.10.96Contig3067_atContig3067--3e+0At5g57815cytochrome c oxidase subunit 6b, putativeO.I.H.G.S.X.
0.3647.10.96Contig5691_atContig5691--6e-3At4g34970ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)O.I.H.G.S.X.
0.2935.50.96Contig8312_atContig8312--1e-1At3g23610dual specificity protein phosphatase (DsPTP1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.296.3GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.194.1GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.993.4GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
2.792.7GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
2.692.3GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
2.692.3GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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