CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9426_at

Gene name
Homology with Arabidopsis Similar to At5g51340: unknown protein (HF=2e-2)

Module size 6 genes

NF 0.91

%ile 99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig9426_at Contig9426 - - 2e-2 At5g51340 unknown protein O.I. H.G. S.X.
0.91 98.1 0.95 Contig15145_at Contig15145 - - 1e-61 At3g09920 PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) O.I. H.G. S.X.
0.91 98.1 0.96 HV_CEa0012H15r2_at HV_CEa0012H15r2 - - 4e+0 At1g11450 nodulin MtN21 family protein O.I. H.G. S.X.
0.91 98.1 0.96 Contig21454_x_at Contig21454 - - 4e+0 At4g01265 raffinose synthase family protein / seed imbibition protein-related O.I. H.G. S.X.
0.83 94.0 0.95 Contig23898_at Contig23898 - - 4e-1 At2g01610 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.57 74.9 0.96 Contig21304_s_at Contig21304 - - 3e+0 At5g10390 histone H3 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.96	Contig9426_at	Contig9426	-	-	2e-2	At5g51340	unknown protein	O.I.	H.G.	S.X.
0.91	98.1	0.95	Contig15145_at	Contig15145	-	-	1e-61	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	O.I.	H.G.	S.X.
0.91	98.1	0.96	HV_CEa0012H15r2_at	HV_CEa0012H15r2	-	-	4e+0	At1g11450	nodulin MtN21 family protein	O.I.	H.G.	S.X.
0.91	98.1	0.96	Contig21454_x_at	Contig21454	-	-	4e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	O.I.	H.G.	S.X.
0.83	94.0	0.95	Contig23898_at	Contig23898	-	-	4e-1	At2g01610	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.57	74.9	0.96	Contig21304_s_at	Contig21304	-	-	3e+0	At5g10390	histone H3	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.91	HVSMEf0001G07r2_at	HVSMEf0001G07r2	-	-	1e+0	At1g10830	sodium symporter-related	O.I.	H.G.	S.X.
0.80	92.5	0.93	HO14P06S_at	HO14P06S	-	-	1e+1	At5g17950	unknown protein	O.I.	H.G.	S.X.
0.71	87.1	0.92	Contig19262_at	Contig19262	-	-	5e+0	At2g24540	AFR (ATTENUATED FAR-RED RESPONSE)	O.I.	H.G.	S.X.
0.67	84.7	0.92	Contig14080_at	Contig14080	-	-	4e-9	At2g21120	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.94	Contig4391_s_at	Contig4391	-	-	1e-1	At4g35120	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.63	80.3	0.89	EBro03_SQ005_G05_at	EBro03_SQ005_G05	-	-	1e+1	At4g00238	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.
0.60	77.3	0.93	Contig19597_at	Contig19597	-	-	6e+0	At5g64667	IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)	O.I.	H.G.	S.X.
0.53	69.7	0.92	Contig11288_x_at	Contig11288	-	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.
0.50	66.9	0.87	HVSMEb0007C23r2_at	HVSMEb0007C23r2	-	-	1e+0	At5g24250	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.92	HV14P02u_at	HV14P02u	-	-	4e+0	At3g06740	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.50	66.9	0.93	Contig20759_at	Contig20759	-	-	3e+0	At1g27330	-	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig4394_at	Contig4394	-	-	1e-1	At3g06000	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.46	61.0	0.94	HO10M16S_at	HO10M16S	-	-	7e-5	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.
0.43	56.4	0.89	Contig16939_at	Contig16939	-	-	2e-10	At5g55560	protein kinase family protein	O.I.	H.G.	S.X.
0.42	55.2	0.91	Contig191_at	Contig191	-	-	7e-6	At2g33740	CUTA	O.I.	H.G.	S.X.
0.42	55.2	0.92	Contig15467_at	Contig15467	-	-	5e+0	At3g15358	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.87	HV10J10u_x_at	HV10J10u	-	-	2e-4	At2g24200	cytosol aminopeptidase	O.I.	H.G.	S.X.
0.40	53.1	0.94	Contig1216_s_at	Contig1216	-	-	3e-12	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	O.I.	H.G.	S.X.
0.39	50.5	0.84	Contig20981_at	Contig20981	-	-	1e+0	At5g04600	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.38	49.5	0.83	HVSMEm0023N10r2_at	HVSMEm0023N10r2	-	-	4e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.
0.38	49.5	0.88	Contig16049_at	Contig16049	-	-	7e+0	At4g30500	unknown protein	O.I.	H.G.	S.X.
0.38	49.5	0.91	HV11I05u_x_at	HV11I05u	-	-	5e+0	At2g29930	F-box family protein	O.I.	H.G.	S.X.
0.36	47.1	0.94	Contig17526_at	Contig17526	-	-	4e+0	At4g33020	ZIP9	O.I.	H.G.	S.X.
0.34	43.6	0.93	Contig6744_at	Contig6744	-	-	1e-8	At1g30970	SUF4 (suppressor of FRIGIDA4)	O.I.	H.G.	S.X.
0.34	43.6	0.94	HVSMEb0014B13r2_at	HVSMEb0014B13r2	-	-	5e+0	At2g35208	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.89	Contig18967_at	Contig18967	-	-	7e-25	At3g03940	protein kinase family protein	O.I.	H.G.	S.X.
0.33	42.6	0.93	HW02P01u_at	HW02P01u	-	-	1e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.
0.32	40.3	0.87	Contig13953_at	Contig13953	-	-	4e-5	At2g35450	catalytic/ hydrolase	O.I.	H.G.	S.X.
0.32	40.3	0.91	HVSMEn0013N19f_s_at	HVSMEn0013N19f	-	-	1e+0	At4g36100	-	O.I.	H.G.	S.X.
0.32	40.3	0.92	Contig12086_at	Contig12086	-	-	1e+0	At1g49640	hydrolase	O.I.	H.G.	S.X.
0.32	40.3	0.88	Contig14510_at	Contig14510	-	-	3e+0	At2g46750	FAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.32	40.3	0.89	Contig16703_at	Contig16703	-	-	4e-1	At1g04370	ATERF14 (Ethylene-responsive element binding factor 14)	O.I.	H.G.	S.X.
0.31	38.6	0.89	Contig4329_at	Contig4329	-	-	1e-18	At4g12650	-	O.I.	H.G.	S.X.
0.31	38.6	0.89	HD11L13r_at	HD11L13r	-	-	6e-2	At1g68330	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.90	Contig12078_at	Contig12078	-	-	4e-6	At3g50380	-	O.I.	H.G.	S.X.
0.31	38.6	0.93	Contig1248_s_at	Contig1248	-	-	3e-8	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.
0.30	37.0	0.91	Contig15941_at	Contig15941	-	-	2e-1	At2g38820	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.87	Contig20225_at	Contig20225	-	-	8e-1	At1g65620	AS2 (ASYMMETRIC LEAVES 2)	O.I.	H.G.	S.X.
0.29	35.5	0.87	Contig21360_at	Contig21360	-	-	2e+0	At4g09545	-	O.I.	H.G.	S.X.
0.29	35.5	0.90	Contig18370_at	Contig18370	-	-	6e+0	At5g04170	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.28	35.5	0.88	Contig20043_at	Contig20043	-	-	1e-4	At2g24520	AHA5 (Arabidopsis H(+)-ATPase 5)	O.I.	H.G.	S.X.
0.27	32.1	0.90	Contig3211_at	Contig3211	-	-	4e-1	At5g11500	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	0.91	Contig1324_at	Contig1324	-	-	4e-1	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.
0.27	32.1	0.79	Contig20723_at	Contig20723	-	-	5e+0	At3g23805	RALFL24 (ralf-like 24)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.1 99.3 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.6 99.0 GSM372948 genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1 96.2 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM372966 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6 95.3 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
3.5 95.1 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
3.4 94.8 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.1	99.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.6	99.0	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM372966	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.5	95.1	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.4	94.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig9426_at
Gene name
Homology with Arabidopsis	Similar to At5g51340: unknown protein (HF=2e-2)
Module size	6 genes
NF	0.91
%ile	99.2

Co-expression analysis

Gene ID Contig9426_at Gene name Homology with ArabidopsisSimilar to At5g51340: unknown protein (HF=2e-2) Module size 6 genes NF 0.91 %ile 99.2

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig9426_at

Gene name
Homology with Arabidopsis Similar to At5g51340: unknown protein (HF=2e-2)

Module size 6 genes

NF 0.91

%ile 99.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays