Co-expression analysis

Gene ID Contig9426_at
Gene name
Homology with ArabidopsisSimilar to At5g51340: unknown protein (HF=2e-2)
Module size 6 genes
NF 0.91
%ile 99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig9426_atContig9426--2e-2At5g51340unknown proteinO.I.H.G.S.X.
0.9198.10.95Contig15145_atContig15145--1e-61At3g09920PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)O.I.H.G.S.X.
0.9198.10.96HV_CEa0012H15r2_atHV_CEa0012H15r2--4e+0At1g11450nodulin MtN21 family proteinO.I.H.G.S.X.
0.9198.10.96Contig21454_x_atContig21454--4e+0At4g01265raffinose synthase family protein / seed imbibition protein-relatedO.I.H.G.S.X.
0.8394.00.95Contig23898_atContig23898--4e-1At2g01610invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.5774.90.96Contig21304_s_atContig21304--3e+0At5g10390histone H3O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.199.3GSM372984genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
9.699.0GSM372948genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.296.3GSM372945genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.196.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.695.3GSM372966genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
3.695.3GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
3.595.1GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.494.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM372967genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1615474_at, orthologous to the query gene, Contig9426_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8093.61615474_atAt5g51340--8e-49At4g39520GTP-binding protein, putativeO.I.H.G.S.X.
0.3548.51606545_atAt5g51340hypothetical protein LOC100262248-4e+0At5g28615-O.I.H.G.S.X.
0.3243.11619812_atAt5g51340hypothetical protein LOC100248620-3e-24At5g24400emb2024 (embryo defective 2024)O.I.H.G.S.X.
0.3141.31607256_s_atAt5g51340--4e-42At3g26618ERF1-3 (eukaryotic release factor 1-3)O.I.H.G.S.X.
0.2734.01617144_s_atAt5g51340hypothetical protein LOC100245007-2e-53At1g097802,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putativeO.I.H.G.S.X.
0.088.51616871_atAt5g51340hypothetical protein LOC100253007 /// similar to putative dihydrolipoamide succinyltransferase-3e-26At4g269102-oxoacid dehydrogenase family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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