Co-expression analysis

Gene ID	Contig9426_at
Gene name
Homology with Arabidopsis	Similar to At5g51340: unknown protein (HF=2e-2)
Module size	6 genes
NF	0.91
%ile	99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig9426_at	Contig9426	-	-	2e-2	At5g51340	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.95	Contig15145_at	Contig15145	-	-	1e-61	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.96	HV_CEa0012H15r2_at	HV_CEa0012H15r2	-	-	4e+0	At1g11450	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.96	Contig21454_x_at	Contig21454	-	-	4e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig23898_at	Contig23898	-	-	4e-1	At2g01610	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig21304_s_at	Contig21304	-	-	3e+0	At5g10390	histone H3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.1	99.3	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.6	99.0	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM372966	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.5	95.1	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.4	94.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.157124.1.S1_at, orthologous to the query gene, Contig9426_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	PtpAffx.157124.1.S1_at	At5g51340	hypothetical protein	-	3e-11	At5g51340	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.65	88.6	PtpAffx.119964.1.S1_s_at	At5g51340	hypothetical protein	-	7e-10	At2g41060	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	PtpAffx.107372.1.S1_at	At5g51340	hypothetical protein	-	3e-8	At2g22010	RKP (Related to KPC1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.160969.1.S1_at	At5g51340	hypothetical protein	-	1e-20	At1g32810	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.72383.1.S1_at	At5g51340	-	-	2e+0	At4g24265	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.92667.1.S1_s_at	At5g51340	hypothetical protein	-	6e-35	At4g08540	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.95687.1.A1_at	At5g51340	hypothetical protein	-	4e-4	At2g25010	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.43198.1.S1_s_at	At5g51340	hypothetical protein	-	7e-70	At3g11540	SPY (SPINDLY)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.210621.1.S1_s_at	At5g51340	histone acetyltransferase /// histone acetyltransferase	-	0	At5g50320	ELO3 (ELONGATA 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.218665.1.S1_at	At5g51340	hypothetical protein	-	1e-15	At3g06910	ULP1A (UB-LIKE PROTEASE 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.210963.1.S1_at	At5g51340	hypothetical protein	-	2e-26	At3g05090	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.217914.1.S1_at	At5g51340	hypothetical protein	-	1e-47	At5g15400	U-box domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.4562.1.S1_s_at	At5g51340	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.23095.1.S1_at	At5g51340	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.221910.1.S1_at	At5g51340	hypothetical protein	-	1e-48	At3g53390	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.207926.1.S1_at	At5g51340	hypothetical protein	-	8e-102	At3g17205	UPL6 (UBIQUITIN PROTEIN LIGASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.149265.1.S1_s_at	At5g51340	hypothetical protein	-	3e-54	At2g14260	PIP	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.132468.1.S1_s_at	At5g51340	-	-	4e-1	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.53470.1.S1_at	At5g51340	hypothetical protein	-	6e-56	At1g12050	fumarylacetoacetase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.105080.1.S1_s_at	At5g51340	hypothetical protein	-	5e-38	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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