Co-expression analysis

Gene ID	Contig9390_at
Gene name
Homology with Arabidopsis	Similar to At1g71190: SAG18 (SENESCENCE ASSOCIATED GENE 18) (HF=8e-7)
Module size	7 genes
NF	0.35
%ile	47.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.93	Contig9390_at	Contig9390	-	-	8e-7	At1g71190	SAG18 (SENESCENCE ASSOCIATED GENE 18)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig12844_at	Contig12844	-	-	7e+0	At5g50830	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig14162_at	Contig14162	-	-	2e-14	At4g36400	FAD linked oxidase family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	Contig14751_at	Contig14751	-	-	6e-5	At5g18420	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig14446_at	Contig14446	-	-	4e-1	At1g59865	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig22451_at	Contig22451	-	-	1e-1	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig8134_at	Contig8134	-	-	2e-17	At1g54220	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.1	99.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.7	99.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.3	98.5	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.1	98.0	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.2	97.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.1	97.3	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.0	96.0	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.7	95.5	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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