Co-expression analysis

Gene ID Contig9390_at
Gene name
Homology with ArabidopsisSimilar to At1g71190: SAG18 (SENESCENCE ASSOCIATED GENE 18) (HF=8e-7)
Module size 7 genes
NF 0.35
%ile 47.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.93Contig9390_atContig9390--8e-7At1g71190SAG18 (SENESCENCE ASSOCIATED GENE 18)O.I.H.G.S.X.
0.4661.00.94Contig12844_atContig12844--7e+0At5g50830unknown proteinO.I.H.G.S.X.
0.4661.00.95Contig14162_atContig14162--2e-14At4g36400FAD linked oxidase family proteinO.I.H.G.S.X.
0.3747.90.94Contig14751_atContig14751--6e-5At5g18420unknown proteinO.I.H.G.S.X.
0.2326.10.95Contig14446_atContig14446--4e-1At1g59865unknown proteinO.I.H.G.S.X.
0.2122.60.95Contig22451_atContig22451--1e-1At2g23320WRKY15O.I.H.G.S.X.
0.2021.10.94Contig8134_atContig8134--2e-17At1g54220dihydrolipoamide S-acetyltransferase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.199.5GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.799.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.798.9GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.398.5GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
6.198.0GSM146358Golden Promise Root Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.297.4GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.197.3GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.396.4GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
4.096.0GSM431551pathogen isolates: Polymyxa graminis - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.795.5GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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