Co-expression analysis

Gene ID Contig9354_at
Gene name
Homology with ArabidopsisSimilar to At3g50960: PLP3a (Phosducin-like protein 3 homolog) (HF=3e-5)
Module size 37 genes
NF 0.23
%ile 29.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.60.90Contig9354_atContig9354--3e-5At3g50960PLP3a (Phosducin-like protein 3 homolog)O.I.H.G.S.X.
0.3545.10.94Contig14673_atContig14673--8e+0At5g35290unknown proteinO.I.H.G.S.X.
0.3342.60.93Contig3899_atContig3899--6e-10At3g13200EMB2769 (EMBRYO DEFECTIVE 2769)O.I.H.G.S.X.
0.3342.60.93Contig7588_atContig7588--5e-1At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.3342.60.92Contig12067_atContig12067--1e-5At3g51460RHD4 (ROOT HAIR DEFECTIVE4)O.I.H.G.S.X.
0.3342.60.94Contig8833_atContig8833--2e+0At1g63855unknown proteinO.I.H.G.S.X.
0.3240.30.94HM08E17r_atHM08E17r--6e-2At5g07140protein kinase family proteinO.I.H.G.S.X.
0.3240.30.95Contig23686_atContig23686--4e+0At2g10014unknown proteinO.I.H.G.S.X.
0.3240.30.94Contig17421_atContig17421--4e+0At1g45248-O.I.H.G.S.X.
0.3138.60.93Contig15097_atContig15097--3e-1At5g51720unknown proteinO.I.H.G.S.X.
0.3037.00.94Contig11498_atContig11498--2e+0At5g07225zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2935.50.93EBem08_SQ004_M17_atEBem08_SQ004_M17--4e+0Atmg00840-O.I.H.G.S.X.
0.2528.90.92Contig10992_atContig10992--7e-1At1g16250kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.2427.20.91Contig18358_x_atContig18358--2e-1At3g52380CP33O.I.H.G.S.X.
0.2326.10.96Contig10338_atContig10338--4e-2At5g54900ATRBP45A (RNA-binding protein 45A)O.I.H.G.S.X.
0.2326.10.92Contig12356_atContig12356--2e-6At1g20000TAF11b (TBP-ASSOCIATED FACTOR 11b)O.I.H.G.S.X.
0.2326.10.94Contig23379_atContig23379--9e-2At2g02020proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.2326.10.95HU11L10u_s_atHU11L10u--2e+0At1g59865unknown proteinO.I.H.G.S.X.
0.2224.20.94Contig11538_atContig11538--4e-8At4g37120SMP2O.I.H.G.S.X.
0.2224.20.94Contig5121_s_atContig5121--1e+1At5g47060senescence-associated protein-relatedO.I.H.G.S.X.
0.2122.60.93Contig20506_atContig20506--1e-4At2g44410protein binding / zinc ion bindingO.I.H.G.S.X.
0.2122.60.93HI14B04r_s_atHI14B04r--6e+0At2g28690unknown proteinO.I.H.G.S.X.
0.2021.10.95Contig7170_atContig7170--2e+0At1g32540LOL1 (LSD ONE LIKE 1)O.I.H.G.S.X.
0.2021.10.95Contig1223_atContig1223aquaporin-6e-38At2g37170PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)O.I.H.G.S.X.
0.1919.60.92Contig10432_atContig10432--2e-29At3g60750transketolase, putativeO.I.H.G.S.X.
0.1919.60.95Contig16699_atContig16699--3e-1At1g33640unknown proteinO.I.H.G.S.X.
0.1919.60.95Contig5327_atContig5327--1e-16At3g07770ATP bindingO.I.H.G.S.X.
0.1818.20.94Contig16787_atContig16787--2e+0At3g11320organic anion transmembrane transporterO.I.H.G.S.X.
0.1818.20.95Contig7964_atContig7964--4e-2At1g19140-O.I.H.G.S.X.
0.1818.20.95Contig3125_atContig3125--2e-15At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.1818.20.94Contig13294_atContig13294--6e+0At5g28463unknown proteinO.I.H.G.S.X.
0.1818.20.95Contig13164_atContig13164--2e+0At5g60553-O.I.H.G.S.X.
0.1514.10.94HV_CEa0014A19r2_atHV_CEa0014A19r2--3e+0At1g58160jacalin lectin family proteinO.I.H.G.S.X.
0.1514.10.94Contig4878_atContig4878--8e-19At1g47260GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.1412.90.94Contig9706_atContig9706--2e-4At2g33610ATSWI3B (SWITCH SUBUNIT 3)O.I.H.G.S.X.
0.1210.40.95Contig16886_atContig16886--5e+0At5g60460sec61beta family proteinO.I.H.G.S.X.
0.119.40.93Contig4360_atContig4360--2e-6At5g61500ATG3O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.498.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.692.3GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
2.692.3GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
2.692.3GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.491.4GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.290.3GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.290.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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