Co-expression analysis

Gene ID	Contig9338_at
Gene name
Homology with Arabidopsis	Similar to At5g65110: ACX2 (ACYL-COA OXIDASE 2) (HF=2e-11)
Module size	14 genes
NF	0.17
%ile	20.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	0.93	Contig9338_at	Contig9338	-	-	2e-11	At5g65110	ACX2 (ACYL-COA OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.90	Contig9337_at	Contig9337	-	-	2e-16	At5g65110	ACX2 (ACYL-COA OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig13355_at	Contig13355	-	-	8e-1	At2g30960	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.96	Contig8242_at	Contig8242	-	-	1e+0	At5g11620	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig8243_at	Contig8243	-	-	3e+0	At3g47670	enzyme inhibitor/ pectinesterase/ pectinesterase inhibitor	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig10915_at	Contig10915	-	-	4e-1	At5g53140	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig8333_at	Contig8333	-	-	4e-2	At3g56510	TBP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig20746_at	Contig20746	-	-	4e-19	At4g33460	ATNAP13	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	HU04B19u_at	HU04B19u	-	-	4e+0	At3g48480	cysteine-type peptidase	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig17270_at	Contig17270	-	-	3e-2	At5g59400	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	Contig8025_at	Contig8025	-	-	2e-44	At1g32380	ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.95	rbags16m05_s_at	rbags16m05	-	-	7e-1	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.95	Contig13042_at	Contig13042	-	-	3e-1	At1g60350	anac024 (Arabidopsis NAC domain containing protein 24)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.95	Contig18484_at	Contig18484	-	-	7e+0	At5g64480	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	95.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.5	91.9	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.4	91.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.4	91.4	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.4	91.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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