Co-expression analysis

Gene ID Contig9301_at
Gene name
Homology with ArabidopsisSimilar to At1g14860: atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18) (HF=3e-2)
Module size 6 genes
NF 0.22
%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4053.10.87Contig9301_atContig9301--3e-2At1g14860atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18)O.I.H.G.S.X.
0.3138.60.88Contig8396_atContig8396--6e+0At3g20910NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9)O.I.H.G.S.X.
0.2427.20.85Contig406_atContig406--2e+0At5g42100ATBG_PAPO.I.H.G.S.X.
0.2326.10.85HV_CEb0004B04r2_x_atHV_CEb0004B04r2--1e+1At5g55640unknown proteinO.I.H.G.S.X.
0.1818.20.87Contig6949_atContig6949--2e+0At2g25230MYB100 (myb domain protein 100)O.I.H.G.S.X.
0.1514.10.85Contig3498_atContig3498--7e-59At5g06360ribosomal protein S8e family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.699.5GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
11.999.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.699.0GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.198.9GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.198.4GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.798.3GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.897.8GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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