Co-expression analysis

Gene ID	Contig9249_at
Gene name
Homology with Arabidopsis	Similar to At3g15110: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.15
%ile	17.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.92	Contig9249_at	Contig9249	-	-	1e+0	At3g15110	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig5166_at	Contig5166	-	-	7e-2	At2g39940	COI1 (CORONATINE INSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.92	Contig26001_at	Contig26001	-	-	4e+0	At1g03710	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.93	Contig12001_at	Contig12001	-	-	1e-1	At5g57015	ckl12 (Casein Kinase I-like 12)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.94	Contig15558_at	Contig15558	-	-	1e+0	At1g12080	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.92	Contig9629_at	Contig9629	-	-	6e-1	At4g18620	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.3	99.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
9.3	99.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.8	98.6	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.0	97.9	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.5	95.1	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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