CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9237_at

Gene name
Homology with Arabidopsis Similar to At1g07570: APK1A (HF=6e-8)

Module size 6 genes

NF 0.51

%ile 71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.7 0.95 Contig9237_at Contig9237 - - 6e-8 At1g07570 APK1A O.I. H.G. S.X.
0.67 84.7 0.96 Contig662_at Contig662 - - 1e-1 At5g22240 OFP10 O.I. H.G. S.X.
0.46 61.0 0.96 Contig11455_at Contig11455 - - 1e-2 At3g18165 MOS4 (Modifier of snc1,4) O.I. H.G. S.X.
0.44 58.9 0.96 Contig13131_at Contig13131 - - 6e-1 At5g15610 proteasome family protein O.I. H.G. S.X.
0.44 58.9 0.97 Contig642_at Contig642 - - 4e-5 At4g08930 ATAPRL6 (APR-like 6) O.I. H.G. S.X.
0.31 38.6 0.96 Contig6527_at Contig6527 - - 8e-1 At3g07350 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	88.7	0.95	Contig9237_at	Contig9237	-	-	6e-8	At1g07570	APK1A	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig662_at	Contig662	-	-	1e-1	At5g22240	OFP10	O.I.	H.G.	S.X.
0.46	61.0	0.96	Contig11455_at	Contig11455	-	-	1e-2	At3g18165	MOS4 (Modifier of snc1,4)	O.I.	H.G.	S.X.
0.44	58.9	0.96	Contig13131_at	Contig13131	-	-	6e-1	At5g15610	proteasome family protein	O.I.	H.G.	S.X.
0.44	58.9	0.97	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.
0.31	38.6	0.96	Contig6527_at	Contig6527	-	-	8e-1	At3g07350	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	77.3	0.94	Contig5236_at	Contig5236	-	-	6e-1	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	O.I.	H.G.	S.X.
0.50	66.9	0.92	Contig9576_at	Contig9576	-	-	1e+0	At3g25855	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig8161_at	Contig8161	-	-	8e-2	At2g46640	unknown protein	O.I.	H.G.	S.X.
0.48	63.2	0.93	Contig9753_at	Contig9753	-	-	3e-46	At3g22880	DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)	O.I.	H.G.	S.X.
0.46	61.0	0.94	HVSMEm0014K11r2_at	HVSMEm0014K11r2	-	-	3e-1	At3g60450	-	O.I.	H.G.	S.X.
0.46	61.0	0.94	Contig9022_at	Contig9022	-	-	2e-55	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	O.I.	H.G.	S.X.
0.44	58.9	0.93	Contig6962_at	Contig6962	-	-	1e-1	At5g19473	-	O.I.	H.G.	S.X.
0.44	58.9	0.94	Contig9779_at	Contig9779	-	-	2e+0	At2g15910	CSL zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.44	58.9	0.94	Contig1424_at	Contig1424	-	-	2e-119	At5g17920	ATMS1	O.I.	H.G.	S.X.
0.40	53.1	0.95	Contig8913_at	Contig8913	-	-	3e-9	At1g22200	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.95	Contig3421_at	Contig3421	-	-	7e-69	At2g23080	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.
0.36	47.1	0.95	Contig8431_at	Contig8431	-	-	5e-1	At2g42350	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.36	47.1	0.95	Contig20899_at	Contig20899	-	-	6e+0	At5g06760	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	O.I.	H.G.	S.X.
0.31	38.6	0.95	Contig17270_at	Contig17270	-	-	3e-2	At5g59400	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	0.96	Contig8973_at	Contig8973	-	-	5e-10	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	O.I.	H.G.	S.X.
0.29	35.5	0.94	rbags11m06_s_at	rbags11m06	-	-	1e-8	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.
0.27	32.1	0.95	Contig24914_at	Contig24914	-	-	1e+0	At5g09650	AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)	O.I.	H.G.	S.X.
0.27	32.1	0.95	Contig12826_at	Contig12826	-	-	6e+0	Atmg00970	-	O.I.	H.G.	S.X.
0.27	32.1	0.96	Contig5719_at	Contig5719	-	-	6e-8	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	O.I.	H.G.	S.X.
0.27	32.1	0.96	Contig13467_at	Contig13467	-	-	5e-10	At1g77180	chromatin protein family	O.I.	H.G.	S.X.
0.25	28.9	0.90	Contig10281_at	Contig10281	-	-	9e+0	At5g14780	FDH (FORMATE DEHYDROGENASE)	O.I.	H.G.	S.X.
0.25	28.9	0.93	Contig14211_at	Contig14211	-	-	6e-1	At4g22400	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.94	Contig12488_at	Contig12488	-	-	7e+0	At5g03310	auxin-responsive family protein	O.I.	H.G.	S.X.
0.25	28.9	0.95	Contig85_x_at	Contig85	-	-	2e-6	At1g08880	H2AXA	O.I.	H.G.	S.X.
0.25	28.9	0.95	Contig5698_at	Contig5698	-	-	3e-6	At4g32120	galactosyltransferase family protein	O.I.	H.G.	S.X.
0.25	28.9	0.96	Contig6509_at	Contig6509	-	-	4e-21	At5g12040	carbon-nitrogen hydrolase family protein	O.I.	H.G.	S.X.
0.25	28.9	0.96	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.0 99.6 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM440978 Stressed seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
17.0	99.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Contig9237_at
Gene name
Homology with Arabidopsis	Similar to At1g07570: APK1A (HF=6e-8)
Module size	6 genes
NF	0.51
%ile	71.8

Co-expression analysis

Gene ID Contig9237_at Gene name Homology with ArabidopsisSimilar to At1g07570: APK1A (HF=6e-8) Module size 6 genes NF 0.51 %ile 71.8

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig9237_at

Gene name
Homology with Arabidopsis Similar to At1g07570: APK1A (HF=6e-8)

Module size 6 genes

NF 0.51

%ile 71.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays