Co-expression analysis

Gene ID	Contig9237_at
Gene name
Homology with Arabidopsis	Similar to At1g07570: APK1A (HF=6e-8)
Module size	6 genes
NF	0.51
%ile	71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.95	Contig9237_at	Contig9237	-	-	6e-8	At1g07570	APK1A	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig662_at	Contig662	-	-	1e-1	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig11455_at	Contig11455	-	-	1e-2	At3g18165	MOS4 (Modifier of snc1,4)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig13131_at	Contig13131	-	-	6e-1	At5g15610	proteasome family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig6527_at	Contig6527	-	-	8e-1	At3g07350	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.0	99.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the grape gene, 1619555_at, orthologous to the query gene, Contig9237_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.0	1619555_at	At1g07570	hypothetical protein LOC100250154	-	3e-61	At5g02800	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1614871_s_at	At1g07570	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1609064_s_at	At1g07570	hypothetical protein LOC100251648	-	6e-18	At3g53570	AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1611104_at	At1g07570	hypothetical protein LOC100245612	-	2e-8	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1614869_at	At1g07570	hypothetical protein LOC100251847	-	1e-12	At1g50500	HIT1 (HEAT-INTOLERANT 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1612995_at	At1g07570	-	-	4e-18	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1618681_at	At1g07570	hypothetical protein LOC100241923	-	1e-30	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1621888_at	At1g07570	hypothetical protein LOC100252475	-	4e-1	At5g39570	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1606542_at	At1g07570	hypothetical protein LOC100250325	-	1e+0	At2g10450	14-3-3 protein, putative / grf15, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	1619318_at	At1g07570	hypothetical protein LOC100248394	-	5e+0	At5g65840	-	O.I.	H.G.	S.X.	Please select
0.30	39.4	1614339_at	At1g07570	hypothetical protein LOC100242639	-	1e+0	At1g27300	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1610225_at	At1g07570	hypothetical protein LOC100246531	-	1e+0	At1g26140	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1612428_at	At1g07570	similar to shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4)	-	2e-81	At4g18710	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1612293_at	At1g07570	hypothetical protein LOC100264912	-	1e-65	At4g09000	14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1613483_at	At1g07570	hypothetical protein LOC100255909	-	2e-5	At1g14685	BPC2 (BASIC PENTACYSTEINE 2)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1608604_at	At1g07570	hypothetical protein LOC100260136	-	7e-24	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.	Please select
0.27	34.0	1612790_at	At1g07570	hypothetical protein LOC100243027	-	1e-17	At1g61250	SC3 (SECRETORY CARRIER 3)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1616981_at	At1g07570	phospholipase D alpha	-	4e-52	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1621324_at	At1g07570	-	-	1e-1	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please select
0.24	28.7	1607887_at	At1g07570	hypothetical protein LOC100241008	-	2e+0	At5g50880	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1612193_at	At1g07570	hypothetical protein LOC100257408	-	8e-53	At1g20540	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1617329_at	At1g07570	hypothetical protein LOC100255368	-	5e-49	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.21	24.0	1607686_s_at	At1g07570	similar to 60S ribosomal protein L29	-	7e-10	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1609399_a_at	At1g07570	hypothetical protein LOC100263989	-	2e+0	At1g07350	transformer serine/arginine-rich ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please select
0.17	18.2	1613546_at	At1g07570	hypothetical protein LOC100252142	-	4e-1	At1g74450	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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