Co-expression analysis

Gene ID Contig9237_at
Gene name
Homology with ArabidopsisSimilar to At1g07570: APK1A (HF=6e-8)
Module size 6 genes
NF 0.51
%ile 71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.95Contig9237_atContig9237--6e-8At1g07570APK1AO.I.H.G.S.X.
0.6784.70.96Contig662_atContig662--1e-1At5g22240OFP10O.I.H.G.S.X.
0.4661.00.96Contig11455_atContig11455--1e-2At3g18165MOS4 (Modifier of snc1,4)O.I.H.G.S.X.
0.4458.90.96Contig13131_atContig13131--6e-1At5g15610proteasome family proteinO.I.H.G.S.X.
0.4458.90.97Contig642_atContig642--4e-5At4g08930ATAPRL6 (APR-like 6)O.I.H.G.S.X.
0.3138.60.96Contig6527_atContig6527--8e-1At3g07350unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.099.6GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.998.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.298.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.098.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.898.6GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.898.6GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.61268.1.A1_at, orthologous to the query gene, Contig9237_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7690.1TaAffx.61268.1.A1_atAt1g07570--2e+1At5g60890MYB34 (MYB DOMAIN PROTEIN 34)O.I.H.G.S.X.
0.5173.0TaAffx.83313.1.S1_atAt1g07570--3e+0At5g55570unknown proteinO.I.H.G.S.X.
0.5072.4TaAffx.50318.1.S1_atAt1g07570--3e+0At3g25400-O.I.H.G.S.X.
0.4565.2TaAffx.64914.1.S1_atAt1g07570--4e+0At1g51915cryptdin protein-relatedO.I.H.G.S.X.
0.4464.5TaAffx.28260.1.S1_atAt1g07570--1e+0Atmg01200-O.I.H.G.S.X.
0.4260.9TaAffx.108544.1.S1_x_atAt1g07570--1e+1At4g27270quinone reductase family proteinO.I.H.G.S.X.
0.4159.6TaAffx.105943.1.S1_atAt1g07570--2e+1At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)O.I.H.G.S.X.
0.4159.6TaAffx.13785.2.S1_atAt1g07570--7e-8At2g34690ACD11 (ACCELERATED CELL DEATH 11)O.I.H.G.S.X.
0.4058.4TaAffx.111642.1.S1_atAt1g07570--3e-1At1g27710glycine-rich proteinO.I.H.G.S.X.
0.4058.4TaAffx.135182.1.S1_x_atAt1g07570--2e+1At5g23640unknown proteinO.I.H.G.S.X.
0.3956.1Ta.16453.1.S1_atAt1g07570--1e+0At4g29650cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolaseO.I.H.G.S.X.
0.3854.7TaAffx.9611.1.S1_atAt1g07570--1e+0At3g11110zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3753.0Ta.19361.2.S1_atAt1g07570--5e-15At4g12650-O.I.H.G.S.X.
0.3753.0TaAffx.29693.1.S1_atAt1g07570--4e+0At5g511104-alpha-hydroxytetrahydrobiopterin dehydrataseO.I.H.G.S.X.
0.3753.0TaAffx.108544.1.S1_atAt1g07570--1e+1At4g27270quinone reductase family proteinO.I.H.G.S.X.
0.3346.9Ta.2138.2.S1_atAt1g07570--1e+0At1g55840SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer proteinO.I.H.G.S.X.
0.3142.7Ta.28579.2.S1_atAt1g07570--4e+0At5g67580TRB2O.I.H.G.S.X.
0.3040.9Ta.19591.2.A1_a_atAt1g07570--4e+0At5g11500unknown proteinO.I.H.G.S.X.
0.2839.2TaAffx.112938.1.S1_atAt1g07570--4e+0At1g15010unknown proteinO.I.H.G.S.X.
0.2125.5Ta.5681.1.S1_x_atAt1g07570--1e-4At2g41420proline-rich family proteinO.I.H.G.S.X.
0.2024.0TaAffx.58493.1.S1_atAt1g07570--2e+1At3g02160DNA bindingO.I.H.G.S.X.
0.1415.8Ta.3083.2.A1_atAt1g07570--4e+0At3g05602unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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