Co-expression analysis

Gene ID	Contig9237_at
Gene name
Homology with Arabidopsis	Similar to At1g07570: APK1A (HF=6e-8)
Module size	6 genes
NF	0.51
%ile	71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.95	Contig9237_at	Contig9237	-	-	6e-8	At1g07570	APK1A	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig662_at	Contig662	-	-	1e-1	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig11455_at	Contig11455	-	-	1e-2	At3g18165	MOS4 (Modifier of snc1,4)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig13131_at	Contig13131	-	-	6e-1	At5g15610	proteasome family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig6527_at	Contig6527	-	-	8e-1	At3g07350	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.0	99.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.204085.1.S1_s_at, orthologous to the query gene, Contig9237_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	PtpAffx.204085.1.S1_s_at	At1g07570	hypothetical protein	-	6e-35	At3g28690	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	Ptp.6458.1.S1_at	At1g07570	hypothetical protein	-	9e+0	At5g47455	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.1296.1.S1_at	At1g07570	hypothetical protein	-	5e-12	At1g62640	KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.22504.1.S1_at	At1g07570	hypothetical protein	-	5e-25	At4g34260	FUC95A	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.1405.1.S1_at	At1g07570	hypothetical protein	-	1e-10	At2g47590	PHR2 (photolyase/blue-light receptor 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.10386.1.S1_at	At1g07570	hypothetical protein	-	7e-38	At5g57410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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