CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9237_at

Gene name
Homology with Arabidopsis Similar to At1g07570: APK1A (HF=6e-8)

Module size 6 genes

NF 0.51

%ile 71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.7 0.95 Contig9237_at Contig9237 - - 6e-8 At1g07570 APK1A O.I. H.G. S.X.
0.67 84.7 0.96 Contig662_at Contig662 - - 1e-1 At5g22240 OFP10 O.I. H.G. S.X.
0.46 61.0 0.96 Contig11455_at Contig11455 - - 1e-2 At3g18165 MOS4 (Modifier of snc1,4) O.I. H.G. S.X.
0.44 58.9 0.96 Contig13131_at Contig13131 - - 6e-1 At5g15610 proteasome family protein O.I. H.G. S.X.
0.44 58.9 0.97 Contig642_at Contig642 - - 4e-5 At4g08930 ATAPRL6 (APR-like 6) O.I. H.G. S.X.
0.31 38.6 0.96 Contig6527_at Contig6527 - - 8e-1 At3g07350 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.0 99.6 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM440978 Stressed seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the rice gene, Os05g0110900, orthologous to the query gene, Contig9237_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 Os05g0110900 At1g07570 - Protein kinase APK1B (EC 2.7.1.-) 7e-39 At1g07570 APK1A O.I. H.G. S.X.
0.46 60.9 Os11g0207200 At1g07570 - - 4e-7 At1g53570 MAP3KA O.I. H.G. S.X.
0.35 41.7 Os05g0427300 At1g07570 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 1e-2 At5g13050 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) O.I. H.G. S.X.
0.34 40.0 Os11g0516000 At1g07570 - Serine palmitoyltransferase 8e-20 At5g23670 LCB2 O.I. H.G. S.X.
0.32 36.3 Os06g0681700 At1g07570 - Conserved hypothetical protein 1e+0 At3g07080 membrane protein O.I. H.G. S.X.
0.29 31.1 Os04g0589500 At1g07570 - Conserved hypothetical protein 5e+0 At5g37990 S-adenosylmethionine-dependent methyltransferase/ methyltransferase O.I. H.G. S.X.
0.27 27.5 Os06g0140800 At1g07570 - Protein kinase domain containing protein 4e-4 At5g26150 protein kinase family protein O.I. H.G. S.X.
0.20 16.5 Os02g0574900 At1g07570 - Cyclin-like F-box domain containing protein 4e+0 At3g45275 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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