Co-expression analysis

Gene ID	Contig9237_at
Gene name
Homology with Arabidopsis	Similar to At1g07570: APK1A (HF=6e-8)
Module size	6 genes
NF	0.51
%ile	71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.95	Contig9237_at	Contig9237	-	-	6e-8	At1g07570	APK1A	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig662_at	Contig662	-	-	1e-1	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig11455_at	Contig11455	-	-	1e-2	At3g18165	MOS4 (Modifier of snc1,4)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig13131_at	Contig13131	-	-	6e-1	At5g15610	proteasome family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig6527_at	Contig6527	-	-	8e-1	At3g07350	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.0	99.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the soybean gene, Gma.3111.2.S1_a_at, orthologous to the query gene, Contig9237_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	Gma.3111.2.S1_a_at	At1g07570	-	-	5e-27	At1g07570	APK1A	O.I.	H.G.	S.X.	Please select
0.91	98.6	Gma.7474.1.A1_at	At1g07570	-	-	5e-3	At4g16563	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.91	98.6	GmaAffx.81930.1.S1_at	At1g07570	-	-	1e-2	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.31209.1.S1_at	At1g07570	-	-	3e-1	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	O.I.	H.G.	S.X.	Please select
0.63	82.9	Gma.16683.1.S1_at	At1g07570	-	-	7e-16	At5g24490	30S ribosomal protein, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.13490.2.A1_at	At1g07570	-	-	2e-1	At2g38695	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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