CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9237_at

Gene name
Homology with Arabidopsis Similar to At1g07570: APK1A (HF=6e-8)

Module size 6 genes

NF 0.51

%ile 71.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 88.7 0.95 Contig9237_at Contig9237 - - 6e-8 At1g07570 APK1A O.I. H.G. S.X.
0.67 84.7 0.96 Contig662_at Contig662 - - 1e-1 At5g22240 OFP10 O.I. H.G. S.X.
0.46 61.0 0.96 Contig11455_at Contig11455 - - 1e-2 At3g18165 MOS4 (Modifier of snc1,4) O.I. H.G. S.X.
0.44 58.9 0.96 Contig13131_at Contig13131 - - 6e-1 At5g15610 proteasome family protein O.I. H.G. S.X.
0.44 58.9 0.97 Contig642_at Contig642 - - 4e-5 At4g08930 ATAPRL6 (APR-like 6) O.I. H.G. S.X.
0.31 38.6 0.96 Contig6527_at Contig6527 - - 8e-1 At3g07350 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.0 99.6 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.2 98.7 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.0 98.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.2 97.4 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.8 97.0 GSM440978 Stressed seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g07570, orthologous to the query gene, Contig9237_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g07570 837271 APK1A Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues O.I. H.G. S.X.
0.22 17.5 At1g03590 839447 catalytic/ protein serine/threonine phosphatase F:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:plasma membrane;PMOFV O.I. H.G. S.X.
0.03 0.6 At4g26610 828768 D6PKL1 (D6 PROTEIN KINASE LIKE 1) F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. H.G. S.X.
0.02 0.4 At1g67230 843043 LINC1 (LITTLE NUCLEI1) Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure. O.I. H.G. S.X.
0.02 0.4 At1g35510 840444 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.02 0.4 At4g28760 828997 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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