Co-expression analysis

Gene ID	Contig9224_at
Gene name
Homology with Arabidopsis	Similar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=1e-38)
Module size	12 genes
NF	0.15
%ile	17.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	94.5	0.87	Contig9224_at	Contig9224	-	-	1e-38	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.87	Contig9223_at	Contig9223	-	-	2e+0	At4g13450	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	HVSMEl0003K07r2_at	HVSMEl0003K07r2	-	-	3e-1	At1g03106	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig16601_at	Contig16601	-	-	3e+0	At2g40070	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.92	Contig6326_at	Contig6326	-	-	6e-7	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.92	Contig15807_at	Contig15807	-	-	2e-9	At1g79610	sodium proton exchanger, putative (NHX6)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.91	Contig8707_s_at	Contig8707	-	-	6e-4	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.92	Contig8028_at	Contig8028	-	-	7e-14	At4g21470	ATFMN/FHY (riboflavin kinase/FMN hydrolase)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	Contig11890_at	Contig11890	-	-	4e-5	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.93	Contig16227_at	Contig16227	-	-	4e-1	At4g29770	-	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.91	baak34e14_at	baak34e14	-	-	3e+0	At2g32340	-	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.91	Contig13829_at	Contig13829	-	-	3e-1	At5g37640	UBQ9	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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