Co-expression analysis

Gene ID Contig9224_at
Gene name
Homology with ArabidopsisSimilar to At3g49870: ATARLA1C (ADP-ribosylation factor-like A1C) (HF=1e-38)
Module size 12 genes
NF 0.15
%ile 17.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8594.50.87Contig9224_atContig9224--1e-38At3g49870ATARLA1C (ADP-ribosylation factor-like A1C)O.I.H.G.S.X.
0.2630.40.87Contig9223_atContig9223--2e+0At4g13450universal stress protein (USP) family proteinO.I.H.G.S.X.
0.2630.40.92HVSMEl0003K07r2_atHVSMEl0003K07r2--3e-1At1g03106unknown proteinO.I.H.G.S.X.
0.2326.10.94Contig16601_atContig16601--3e+0At2g40070-O.I.H.G.S.X.
0.1716.90.92Contig6326_atContig6326--6e-7At5g45130RHA1 (RAB HOMOLOG 1)O.I.H.G.S.X.
0.1412.90.92Contig15807_atContig15807--2e-9At1g79610sodium proton exchanger, putative (NHX6)O.I.H.G.S.X.
0.1311.60.91Contig8707_s_atContig8707--6e-4At4g32400SHS1 (SODIUM HYPERSENSITIVE 1)O.I.H.G.S.X.
0.119.40.92Contig8028_atContig8028--7e-14At4g21470ATFMN/FHY (riboflavin kinase/FMN hydrolase)O.I.H.G.S.X.
0.108.40.92Contig11890_atContig11890--4e-5At4g21580oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.064.80.93Contig16227_atContig16227--4e-1At4g29770-O.I.H.G.S.X.
0.054.10.91baak34e14_atbaak34e14--3e+0At2g32340-O.I.H.G.S.X.
0.054.10.91Contig13829_atContig13829--3e-1At5g37640UBQ9O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.598.8GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.294.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.692.3GSM372964genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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