Co-expression analysis

Gene ID Contig9200_at
Gene name
Homology with ArabidopsisSimilar to At5g10230: ANNAT7 (ANNEXIN ARABIDOPSIS 7) (HF=6e-1)
Module size 6 genes
NF 0.56
%ile 77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.96Contig9200_atContig9200--6e-1At5g10230ANNAT7 (ANNEXIN ARABIDOPSIS 7)O.I.H.G.S.X.
0.6178.70.96Contig1056_s_atContig1056--5e-140At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.5066.90.95Contig9642_atContig9642--1e-13At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.4661.00.96Contig6616_atContig6616--1e-57At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.
0.4661.00.96Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.4458.90.95Contig13988_atContig13988--5e-4At4g24020NLP7 (NIN LIKE PROTEIN 7)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.30.97Contig13783_atContig13783--4e-1At2g41225unknown proteinO.I.H.G.S.X.
0.5975.80.95Contig13297_atContig13297--3e-16At3g66658ALDH22a1 (Aldehyde Dehydrogenase 22a1)O.I.H.G.S.X.
0.5066.90.94Contig1362_s_atContig1362--8e-25At3g61110ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)O.I.H.G.S.X.
0.5066.90.96Contig6826_s_atContig6826--8e-1At2g15535LCR10 (Low-molecular-weight cysteine-rich 10)O.I.H.G.S.X.
0.5066.90.97Contig5510_s_atContig5510--1e-1At5g04250OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.4661.00.95Contig9026_atContig9026--1e-3At5g21160La domain-containing protein / proline-rich family proteinO.I.H.G.S.X.
0.4661.00.96Contig9902_atContig9902--2e+0At5g35170adenylate kinase family proteinO.I.H.G.S.X.
0.4458.90.95Contig14599_atContig14599--3e-2At3g17160unknown proteinO.I.H.G.S.X.
0.4053.10.94HV_CEb0022N15r2_atHV_CEb0022N15r2--4e+0At4g00895ATP synthase delta chain-relatedO.I.H.G.S.X.
0.4053.10.95Contig11659_atContig11659--5e-2At5g32440-O.I.H.G.S.X.
0.3545.10.95Contig18916_atContig18916--9e-1At5g09995unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig9248_s_atContig9248--1e+0At3g15110unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig17541_atContig17541--5e-1At1g60995unknown proteinO.I.H.G.S.X.
0.3138.60.93Contig6079_s_atContig6079--4e-2At3g23620brix domain-containing proteinO.I.H.G.S.X.
0.3037.00.94Contig10638_s_atContig10638--5e-1At2g20921unknown proteinO.I.H.G.S.X.
0.3037.00.95Contig18972_atContig18972--4e+0At3g05165sugar transporter, putativeO.I.H.G.S.X.
0.2935.50.95Contig3596_atContig3596arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II-4e-13At5g26120ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)O.I.H.G.S.X.
0.2935.50.95Contig11797_atContig11797--1e+1At4g21216unknown proteinO.I.H.G.S.X.
0.2935.50.95HB26H03r_s_atHB26H03r--3e+0At5g62470MYB96 (myb domain protein 96)O.I.H.G.S.X.
0.2935.50.95Contig7963_atContig7963--9e-12At5g63310NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)O.I.H.G.S.X.
0.2732.10.92Contig9813_atContig9813--6e-1At4g08950EXO (EXORDIUM)O.I.H.G.S.X.
0.2732.10.95Contig15667_atContig15667--2e+0At3g58330unknown proteinO.I.H.G.S.X.
0.2732.10.96Contig10389_atContig10389--2e+0At5g67490unknown proteinO.I.H.G.S.X.
0.2630.40.95Contig5369_atContig5369--1e-1At3g46150unknown proteinO.I.H.G.S.X.
0.2630.40.95Contig5368_atContig5368--2e+0At3g46150unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.599.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.498.8GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.598.6GSM419980Awn_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
7.598.6GSM440971Control awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.598.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.398.1GSM419979Awn_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.398.1GSM440970Control awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.198.0GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.997.9GSM419978Awn_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.997.9GSM440969Control awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage