Co-expression analysis

Gene ID	Contig9200_at
Gene name
Homology with Arabidopsis	Similar to At5g10230: ANNAT7 (ANNEXIN ARABIDOPSIS 7) (HF=6e-1)
Module size	6 genes
NF	0.56
%ile	77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.96	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig6616_at	Contig6616	-	-	1e-57	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.4	98.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.5	98.6	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.5	98.6	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.3	98.1	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.9	97.9	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the maize gene, Zm.17977.1.A1_at, orthologous to the query gene, Contig9200_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	96.8	Zm.17977.1.A1_at	At5g10230	-	-	5e-1	At3g09630	60S ribosomal protein L4/L1 (RPL4A)	O.I.	H.G.	S.X.	Please select
0.68	86.1	Zm.2699.1.A1_at	At5g10230	hypothetical protein LOC100193918	-	1e+1	At5g16170	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.2602.1.S1_at	At5g10230	hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.19237.1.A1_at	At5g10230	hypothetical protein LOC100216898	-	2e-1	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.2147.1.A1_a_at	At5g10230	glycine-rich cell wall structural protein	-	4e-1	At4g01995	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.15804.1.S1_at	At5g10230	-	-	9e-22	At1g65430	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.13088.1.A1_at	At5g10230	-	-	9e-1	At3g29720	transferase-related	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.14622.2.S1_at	At5g10230	ubiquinone biosynthesis methyltransferase COQ5	-	1e-5	At5g57300	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.5277.1.A1_at	At5g10230	-	-	1e+0	At4g39750	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.17331.1.A1_at	At5g10230	-	-	1e-3	At5g51640	YLS7	O.I.	H.G.	S.X.	Please select
0.45	56.4	Zm.3707.1.A1_at	At5g10230	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.3735.1.A1_at	At5g10230	hypothetical protein LOC100277155	-	5e-8	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.7045.1.A1_at	At5g10230	protein pob	-	2e-37	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	ZmAffx.1160.1.A1_at	At5g10230	-	-	1e+1	At1g24060	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.11667.1.A1_at	At5g10230	hypothetical protein LOC100274234	-	4e-1	At4g39630	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.14411.1.A1_a_at	At5g10230	membrane steroid-binding protein 1	-	7e-16	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.6439.2.A1_at	At5g10230	eucaryotic initiation factor7	-	7e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.18338.1.A1_at	At5g10230	hypothetical protein LOC100193344	-	4e+0	At2g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.13202.1.A1_at	At5g10230	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.12930.1.S1_at	At5g10230	hypothetical protein LOC100191377	-	3e-3	At4g31790	diphthine synthase, putative (DPH5)	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.10123.1.S1_at	At5g10230	heat- and acid-stable phosphoprotein	-	3e-14	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.7739.1.A1_at	At5g10230	-	-	6e+0	At1g49260	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.11547.1.S1_at	At5g10230	hypothetical protein LOC100276375	-	1e+1	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.522.1.S1_at	At5g10230	cellulose synthase7	-	1e-38	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.7809.1.A1_at	At5g10230	hypothetical protein LOC100273081	-	2e-8	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.18885.1.A1_at	At5g10230	hypothetical protein LOC100276818	-	3e+0	At5g28780	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.7858.1.A1_at	At5g10230	-	-	3e-3	At1g70940	PIN3 (PIN-FORMED 3)	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.19138.1.S1_at	At5g10230	hypothetical protein LOC100277966	-	5e-1	At2g46300	-	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.10362.1.A1_at	At5g10230	cyclin delta-3	-	5e+0	At3g55240	-	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.19149.1.A1_at	At5g10230	-	-	2e-1	At3g44020	thylakoid lumenal P17.1 protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.3996.1.S1_at	At5g10230	hypothetical protein LOC100274383	-	2e-11	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.34	37.2	Zm.5729.1.A1_at	At5g10230	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.17724.1.S1_a_at	At5g10230	hypothetical protein LOC100278419	-	1e+0	At3g56240	CCH (COPPER CHAPERONE)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.17172.1.A1_at	At5g10230	-	-	2e+0	At1g55675	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.2906.1.S1_at	At5g10230	somatic embryogenesis receptor-like kinase2	-	2e-51	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.2713.2.S1_a_at	At5g10230	-	-	1e-30	At5g60790	ATGCN1	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.9194.1.A1_at	At5g10230	-	-	1e+0	At3g03456	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.2264.1.A1_at	At5g10230	-	-	5e+0	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.10112.1.A1_at	At5g10230	-	-	1e+0	At5g23810	AAP7	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage