Co-expression analysis

Gene ID	Contig9200_at
Gene name
Homology with Arabidopsis	Similar to At5g10230: ANNAT7 (ANNEXIN ARABIDOPSIS 7) (HF=6e-1)
Module size	6 genes
NF	0.56
%ile	77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.96	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig6616_at	Contig6616	-	-	1e-57	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.4	98.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.5	98.6	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.5	98.6	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.3	98.1	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.9	97.9	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the grape gene, 1616738_at, orthologous to the query gene, Contig9200_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1616738_at	At5g10230	-	-	2e-2	At1g22210	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.47	67.7	1612313_at	At5g10230	-	-	9e-2	At5g49630	AAP6 (AMINO ACID PERMEASE 6)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1609201_at	At5g10230	hypothetical protein LOC100255345	-	3e-19	At3g45850	kinesin motor protein-related	O.I.	H.G.	S.X.	Please select
0.43	61.5	1622530_at	At5g10230	hypothetical protein LOC100249036	-	9e-1	At4g19250	kelch repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1610173_at	At5g10230	-	-	4e-4	At4g30010	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	1621225_at	At5g10230	hypothetical LOC100250089	-	1e-15	At4g23820	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1608623_s_at	At5g10230	hypothetical protein LOC100257555	-	9e-2	At5g49630	AAP6 (AMINO ACID PERMEASE 6)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1619056_at	At5g10230	hypothetical protein LOC100248590	-	2e-5	At1g11570	nuclear transport factor 2 (NTF2), putative	O.I.	H.G.	S.X.	Please select
0.15	15.6	1611981_at	At5g10230	-	-	6e-2	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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