Co-expression analysis

Gene ID Contig9200_at
Gene name
Homology with ArabidopsisSimilar to At5g10230: ANNAT7 (ANNEXIN ARABIDOPSIS 7) (HF=6e-1)
Module size 6 genes
NF 0.56
%ile 77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.96Contig9200_atContig9200--6e-1At5g10230ANNAT7 (ANNEXIN ARABIDOPSIS 7)O.I.H.G.S.X.
0.6178.70.96Contig1056_s_atContig1056--5e-140At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.5066.90.95Contig9642_atContig9642--1e-13At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.4661.00.96Contig6616_atContig6616--1e-57At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.
0.4661.00.96Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.4458.90.95Contig13988_atContig13988--5e-4At4g24020NLP7 (NIN LIKE PROTEIN 7)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.599.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.498.8GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.598.6GSM419980Awn_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
7.598.6GSM440971Control awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.598.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.398.1GSM419979Awn_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.398.1GSM440970Control awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.198.0GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.997.9GSM419978Awn_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.997.9GSM440969Control awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.3440.1.S1_s_at, orthologous to the query gene, Contig9200_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8693.0Gma.3440.1.S1_s_atAt5g10230--5e+0At5g67010AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.9198.6GmaAffx.75940.1.S1_atAt5g10230--9e+0At5g65330AGL78 (AGAMOUS-LIKE 78)O.I.H.G.S.X.
0.8993.5Gma.17833.1.S1_atAt5g10230--1e-4At2g32990AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8)O.I.H.G.S.X.
0.8993.5GmaAffx.13164.1.S1_atAt5g10230--8e-1At3g62380-O.I.H.G.S.X.
0.8091.5Gma.12837.1.A1_atAt5g10230--2e-1At5g16390CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)O.I.H.G.S.X.
0.8091.5GmaAffx.53446.1.S1_atAt5g10230--2e-1At5g23590DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.7790.3GmaAffx.35653.1.S1_atAt5g10230--3e-1At3g01970WRKY45O.I.H.G.S.X.
0.7689.7GmaAffx.34470.1.S1_atAt5g10230--3e+0At1g11765S1 self-incompatibility protein-relatedO.I.H.G.S.X.
0.7589.5Gma.1025.1.S1_atAt5g10230--2e+0At1g11970-O.I.H.G.S.X.
0.7589.5GmaAffx.66589.1.S1_atAt5g10230--1e+0At5g20470myosin, putativeO.I.H.G.S.X.
0.7489.2GmaAffx.30011.1.S1_atAt5g10230--3e+0At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.7288.1GmaAffx.44070.1.S1_atAt5g10230--3e+0At4g21040Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.6986.8GmaAffx.79846.1.S1_atAt5g10230--3e+0At1g02090FUS5 (FUSCA 5)O.I.H.G.S.X.
0.6986.8Gma.17068.1.S1_atAt5g10230--1e+0At4g27030small conjugating protein ligaseO.I.H.G.S.X.
0.6886.4Gma.4254.1.S1_atAt5g10230--1e+1Atmg00890-O.I.H.G.S.X.
0.6382.9GmaAffx.58294.1.A1_atAt5g10230--1e+0At1g34770MAGE-8 antigen-relatedO.I.H.G.S.X.
0.5878.8GmaAffx.70956.1.S1_atAt5g10230--2e+0At1g343805'-3' exonuclease family proteinO.I.H.G.S.X.
0.5878.8Gma.8573.1.S1_atAt5g10230--8e-1At2g37760aldo/keto reductase family proteinO.I.H.G.S.X.
0.5576.3GmaAffx.21250.1.S1_atAt5g10230--7e-1At1g03630POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE)O.I.H.G.S.X.
0.5474.8Gma.1817.1.S1_s_atAt5g10230--1e+1At5g23740RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA)O.I.H.G.S.X.
0.5172.3GmaAffx.25878.1.S1_atAt5g10230--4e-1At1g64370unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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