Co-expression analysis

Gene ID	Contig91_at
Gene name
Homology with Arabidopsis	Similar to At4g24190: SHD (SHEPHERD) (HF=2e-67)
Module size	8 genes
NF	0.34
%ile	46.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.85	Contig91_at	Contig91	-	-	2e-67	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.89	Contig4066_at	Contig4066	-	-	1e-4	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.90	HW01P03u_s_at	HW01P03u	-	-	8e+0	At5g35470	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.88	HVSMEn0019L21f_at	HVSMEn0019L21f	-	-	4e+0	At1g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.90	Contig6339_s_at	Contig6339	-	-	2e+0	At1g14450	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.91	Contig3445_at	Contig3445	-	-	3e-3	At5g38470	DNA repair protein RAD23, putative	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.89	Contig5946_at	Contig5946	-	-	2e+0	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.86	Contig11906_at	Contig11906	-	-	2e+0	At5g15910	dehydrogenase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.0	99.4	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.7	99.0	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.9	98.7	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.5	98.6	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.5	98.2	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.5	98.2	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.2	98.0	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.1	98.0	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.1	98.0	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.0	97.9	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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