Co-expression analysis

Gene ID	Contig9163_at
Gene name
Homology with Arabidopsis	Similar to At1g03680: ATHM1 (HF=2e-6)
Module size	8 genes
NF	0.08
%ile	10.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	0.89	Contig9163_at	Contig9163	-	-	2e-6	At1g03680	ATHM1	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	HA07g21r_s_at	HA07g21r	-	-	3e+0	At3g20557	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig6650_at	Contig6650	-	-	8e-1	At5g03550	-	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.91	Contig12250_at	Contig12250	-	-	1e-4	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig8829_at	Contig8829	-	-	1e-1	At1g18210	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	Contig16700_at	Contig16700	-	-	3e+0	At4g00467	-	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.93	HZ56G07r_s_at	HZ56G07r	-	-	2e+0	At3g01030	nucleic acid binding / transcription factor/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.92	Contig20954_at	Contig20954	-	-	8e-2	At1g01490	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.4	99.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
21.8	99.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.4	91.4	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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