Co-expression analysis

Gene ID	Contig9144_at
Gene name
Homology with Arabidopsis	Similar to At3g20860: ATNEK5 (NIMA-RELATED KINASE5) (HF=1e-15)
Module size	6 genes
NF	0.60
%ile	82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.91	Contig9144_at	Contig9144	-	-	1e-15	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.90	HU11B09u_s_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	HU11B09u_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	Contig14921_s_at	Contig14921	-	-	3e+0	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.91	Contig14296_at	Contig14296	-	-	4e+0	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig12950_at	Contig12950	-	-	3e-6	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	99.2	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.7	98.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.7	98.9	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.1	98.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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