Co-expression analysis

Gene ID Contig9136_at
Gene name
Homology with ArabidopsisSimilar to At3g51140: - (HF=1e-5)
Module size 6 genes
NF 0.46
%ile 64.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig9136_atContig9136--1e-5At3g51140-O.I.H.G.S.X.
0.4356.40.97Contig15156_atContig15156--2e+0At1g48210serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.4053.10.97Contig14753_atContig14753--4e-7At5g38060unknown proteinO.I.H.G.S.X.
0.3849.50.97Contig3633_s_atContig3633--7e-1At3g13480unknown proteinO.I.H.G.S.X.
0.3647.10.97Contig12938_atContig12938--1e+0At1g36920unknown proteinO.I.H.G.S.X.
0.3545.10.96HVSMEa0009I06r2_atHVSMEa0009I06r2--9e+0At5g59060unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.97Contig125_atContig125--2e+0At4g25720QC (GLUTAMINYL CYCLASE)O.I.H.G.S.X.
0.6077.30.96Contig11312_atContig11312--1e+1At5g27050AGL101O.I.H.G.S.X.
0.4661.00.96Contig7557_s_atContig7557--6e-18At5g17530phosphoglucosamine mutase family proteinO.I.H.G.S.X.
0.4458.90.96Contig13081_atContig13081--9e-2At3g25573unknown proteinO.I.H.G.S.X.
0.4356.40.93Contig3166_atContig3166--3e-49At1g07410ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)O.I.H.G.S.X.
0.4053.10.94Contig24709_atContig24709--1e+0At5g26840unknown proteinO.I.H.G.S.X.
0.4053.10.95EBpi01_SQ005_P14_atEBpi01_SQ005_P14--1e+0At4g32780phosphoinositide bindingO.I.H.G.S.X.
0.4053.10.95Contig15025_atContig15025--2e+0At5g48655zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3647.10.96Contig7322_atContig7322--2e-3At3g27310PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)O.I.H.G.S.X.
0.3545.10.95Contig25736_atContig25736--1e+0At2g46690auxin-responsive family proteinO.I.H.G.S.X.
0.3342.60.93HB15N21r_s_atHB15N21r--4e+0At4g38520protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.3342.60.94Contig6931_atContig6931--8e-1At2g04480unknown proteinO.I.H.G.S.X.
0.3342.60.95Contig11976_atContig11976--1e-2At1g48912unknown proteinO.I.H.G.S.X.
0.3342.60.96Contig8279_atContig8279--7e-18At3g23990HSP60 (HEAT SHOCK PROTEIN 60)O.I.H.G.S.X.
0.3342.60.96Contig4290_atContig4290--4e-15At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.3138.60.93Contig9086_atContig9086--5e-18At3g48780SPT1 (SERINE PALMITOYLTRANSFERASE 1)O.I.H.G.S.X.
0.3138.60.95Contig6604_atContig6604--1e-4At1g18100E12A11O.I.H.G.S.X.
0.3037.00.94Contig3025_atContig3025--2e-1At2g30310GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.3037.00.94Contig717_x_atContig717--6e+0At3g59840unknown proteinO.I.H.G.S.X.
0.3037.00.94rbags25g03_atrbags25g03--1e+1At5g64880unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig13169_atContig13169--2e-24At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.2935.50.94Contig8906_atContig8906--2e-1At4g26780AR192O.I.H.G.S.X.
0.2935.50.95Contig8033_atContig8033--3e-10At3g61050NTMC2T4O.I.H.G.S.X.
0.2935.50.96Contig10036_atContig10036--2e+0At1g30060COP1-interacting protein-relatedO.I.H.G.S.X.
0.2935.50.96Contig8816_atContig8816--4e+0At5g14670ATARFA1B (ADP-ribosylation factor A1B)O.I.H.G.S.X.
0.2935.50.96Contig5081_atContig5081--5e-7At2g42910ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)O.I.H.G.S.X.
0.2935.50.96Contig16867_atContig16867--7e-9At3g02690integral membrane family proteinO.I.H.G.S.X.
0.2935.50.97Contig12827_atContig12827--8e-1At2g27470NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)O.I.H.G.S.X.
0.2732.10.93Contig15614_atContig15614--5e+0At5g64310AGP1 (ARABINOGALACTAN PROTEIN 1)O.I.H.G.S.X.
0.2732.10.95Contig7584_atContig7584--2e+0At1g23660unknown proteinO.I.H.G.S.X.
0.2732.10.95HD08D07r_s_atHD08D07r--9e+0At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.2732.10.96Contig14472_atContig14472--4e-8At1g28440HSL1 (HAESA-Like 1)O.I.H.G.S.X.
0.2528.90.96Contig10848_atContig10848--9e-9At3g43700ATBPM6 (BTB-POZ and MATH domain 6)O.I.H.G.S.X.
0.2528.90.96Contig15157_atContig15157--1e+0At3g20370meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.197.3GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.097.2GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.696.8GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.596.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.196.2GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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