Co-expression analysis

Gene ID	Contig9136_at
Gene name
Homology with Arabidopsis	Similar to At3g51140: - (HF=1e-5)
Module size	6 genes
NF	0.46
%ile	64.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.97	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig12938_at	Contig12938	-	-	1e+0	At1g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	HVSMEa0009I06r2_at	HVSMEa0009I06r2	-	-	9e+0	At5g59060	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.1	97.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0	97.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.6	96.8	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7946.1.A1_at, orthologous to the query gene, Contig9136_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.2	Ta.7946.1.A1_at	At3g51140	-	-	4e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	O.I.	H.G.	S.X.	Please select
0.86	94.1	Ta.4292.1.S1_x_at	At3g51140	-	-	4e-2	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.78	91.1	Ta.23732.1.S1_at	At3g51140	-	-	6e-1	At4g01935	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	89.4	Ta.4292.1.S1_at	At3g51140	-	-	4e-2	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.4802.1.S1_a_at	At3g51140	-	-	1e-7	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.7261.2.A1_at	At3g51140	-	-	3e-1	At1g28960	ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.1964.3.S1_x_at	At3g51140	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.9554.1.S1_at	At3g51140	-	-	1e+1	Atmg00680	-	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.7261.2.A1_a_at	At3g51140	-	-	3e-1	At1g28960	ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.1964.1.S1_x_at	At3g51140	-	-	2e+0	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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