CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9136_at

Gene name
Homology with Arabidopsis Similar to At3g51140: - (HF=1e-5)

Module size 6 genes

NF 0.46

%ile 64.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.96 Contig9136_at Contig9136 - - 1e-5 At3g51140 - O.I. H.G. S.X.
0.43 56.4 0.97 Contig15156_at Contig15156 - - 2e+0 At1g48210 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.40 53.1 0.97 Contig14753_at Contig14753 - - 4e-7 At5g38060 unknown protein O.I. H.G. S.X.
0.38 49.5 0.97 Contig3633_s_at Contig3633 - - 7e-1 At3g13480 unknown protein O.I. H.G. S.X.
0.36 47.1 0.97 Contig12938_at Contig12938 - - 1e+0 At1g36920 unknown protein O.I. H.G. S.X.
0.35 45.1 0.96 HVSMEa0009I06r2_at HVSMEa0009I06r2 - - 9e+0 At5g59060 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.9 98.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.9 97.9 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.1 97.3 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.0 97.2 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.9 97.1 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.6 96.8 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.5 96.7 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1 96.2 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the rice gene, Os03g0255200, orthologous to the query gene, Contig9136_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 Os03g0255200 At3g51140 - - 1e-2 At3g51140 - O.I. H.G. S.X.
0.80 94.6 Os08g0127600 At3g51140 - Heat shock protein DnaJ, N-terminal domaincontaining protein 7e-1 At1g21770 - O.I. H.G. S.X.
0.73 91.1 Os09g0438700 At3g51140 - 20 kDa chaperonin, chloroplast precursor (ProteinCpn21) (Chloroplast protein Cpn10) (Chloroplastchaperonin 10) (Ch-CPN10) (Chaperonin 20) 2e+0 At5g48605 - O.I. H.G. S.X.
0.35 41.7 Os08g0112600 At3g51140 - Conserved hypothetical protein 1e-1 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) O.I. H.G. S.X.
0.27 27.5 Os06g0136800 At3g51140 - Peptidase S14, ClpP family protein 2e-10 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) O.I. H.G. S.X.
0.10 5.7 Os02g0127700 At3g51140 - Phosphoribosyl pyrophosphate synthase (EC 2.7.6.1) 1e-73 At2g44530 ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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