Co-expression analysis

Gene ID	Contig9113_at
Gene name
Homology with Arabidopsis	Similar to At5g11980: conserved oligomeric Golgi complex component-related / COG complex component-related (HF=2e-26)
Module size	6 genes
NF	0.55
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig9113_at	Contig9113	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig12544_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig7625_at	Contig7625	-	-	4e-1	At5g36659	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig23795_at	Contig23795	-	-	1e+1	At5g49220	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig742_at	Contig742	-	-	4e-3	At1g48920	ATNUC-L1	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig16514_at	Contig16514	-	-	1e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	97.4	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.203717.1.S1_s_at, orthologous to the query gene, Contig9113_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	94.1	PtpAffx.203717.1.S1_s_at	At5g11980	hypothetical protein	-	9e-1	At5g57240	ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.224352.1.S1_s_at	At5g11980	hypothetical protein	-	6e-10	At4g21410	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.225122.1.S1_s_at	At5g11980	BED finger-nbs-lrr resistance protein /// BED finger-nbs-lrr resistance protein /// nbs-lrr resistance protein	-	3e-1	At4g37660	ribosomal protein L12 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.6383.1.S1_a_at	At5g11980	hypothetical protein /// thioredoxin m	-	3e-2	At4g03520	ATHM2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.7971.1.S1_s_at	At5g11980	hypothetical protein	-	3e-23	At1g53580	GLY3 (GLYOXALASE II 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.112822.1.A1_at	At5g11980	hypothetical protein	-	5e+0	At2g28920	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.219.2.S1_s_at	At5g11980	hypothetical protein	-	2e-39	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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