Co-expression analysis

Gene ID Contig9113_at
Gene name
Homology with ArabidopsisSimilar to At5g11980: conserved oligomeric Golgi complex component-related / COG complex component-related (HF=2e-26)
Module size 6 genes
NF 0.55
%ile 76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig9113_atContig9113--2e-26At5g11980conserved oligomeric Golgi complex component-related / COG complex component-relatedO.I.H.G.S.X.
0.5066.90.96Contig12544_atContig12544--2e+1At5g03100F-box family proteinO.I.H.G.S.X.
0.5066.90.96Contig7625_atContig7625--4e-1At5g36659-O.I.H.G.S.X.
0.4661.00.96Contig23795_atContig23795--1e+1At5g49220unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig742_atContig742--4e-3At1g48920ATNUC-L1O.I.H.G.S.X.
0.3849.50.96Contig16514_atContig16514--1e+0At2g01590CRR3 (CHLORORESPIRATORY REDUCTION 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.297.4GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.297.4GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.997.1GSM261069Albina f-17 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.997.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.796.9GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.596.7GSM261063Xantha s-46 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.096.0GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM372956genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0538300, orthologous to the query gene, Contig9113_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.2Os12g0538300At5g11980-Dor1-like protein family protein6e-21At5g11980conserved oligomeric Golgi complex component-related / COG complex component-relatedO.I.H.G.S.X.
0.4458.1Os03g0627300At5g11980-ATP binding protein-like4e-25At4g19540INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)O.I.H.G.S.X.
0.4051.1Os01g0649000At5g11980-WD40-like domain containing protein1e+0At3g56380ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)O.I.H.G.S.X.
0.3846.9Os09g0570200At5g11980-Zn-finger, C2H2 type domain containing protein4e+0At2g03040transmembrane protein-relatedO.I.H.G.S.X.
0.3846.9Os02g0829400At5g11980-Conserved hypothetical protein1e-1At3g56030-O.I.H.G.S.X.
0.3644.0Os05g0102300At5g11980-HAT dimerisation domain containing protein1e+0At4g25150acid phosphatase, putativeO.I.H.G.S.X.
0.3541.7Os04g0218100At5g11980-TPR-like domain containing protein2e-6At5g16860pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3338.8Os01g0205100At5g11980-Antigenic WD protein6e-14At5g45760transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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