Co-expression analysis

Gene ID	Contig9113_at
Gene name
Homology with Arabidopsis	Similar to At5g11980: conserved oligomeric Golgi complex component-related / COG complex component-related (HF=2e-26)
Module size	6 genes
NF	0.55
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig9113_at	Contig9113	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig12544_at	Contig12544	-	-	2e+1	At5g03100	F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig7625_at	Contig7625	-	-	4e-1	At5g36659	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig23795_at	Contig23795	-	-	1e+1	At5g49220	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig742_at	Contig742	-	-	4e-3	At1g48920	ATNUC-L1	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig16514_at	Contig16514	-	-	1e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	97.4	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.9	97.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM372956	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.47025.1.S1_at, orthologous to the query gene, Contig9113_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.47025.1.S1_at	At5g11980	-	-	6e-27	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.6495.1.S1_at	At5g11980	-	-	5e-51	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.17713.1.S1_at	At5g11980	-	-	1e-63	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	O.I.	H.G.	S.X.	Please select
0.18	22.3	Gma.6234.1.S1_at	At5g11980	-	-	3e-31	At3g21865	PEX22 (peroxin 22)	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.1630.1.S1_x_at	At5g11980	-	-	4e-122	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please select
0.08	11.0	Gma.5527.2.S1_at	At5g11980	-	-	3e-16	At5g62600	transportin-SR-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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