CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9101_s_at

Gene name
Homology with Arabidopsis Similar to At5g23930: mitochondrial transcription termination factor-related / mTERF-related (HF=7e+0)

Module size 8 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 61.0 0.89 Contig9101_s_at Contig9101 - - 7e+0 At5g23930 mitochondrial transcription termination factor-related / mTERF-related O.I. H.G. S.X.
0.80 92.5 0.89 Contig8340_at Contig8340 - - 8e-3 At2g41190 amino acid transporter family protein O.I. H.G. S.X.
0.71 87.1 0.89 Contig10972_at Contig10972 - - 1e-5 At1g32500 ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) O.I. H.G. S.X.
0.61 78.7 0.90 Contig16253_at Contig16253 - - 7e+0 At5g48515 - O.I. H.G. S.X.
0.57 74.9 0.90 Contig11287_s_at Contig11287 - - 1e+0 At5g15960 KIN1 O.I. H.G. S.X.
0.56 74.3 0.89 Contig9975_at Contig9975 - - 1e+0 At1g27435 unknown protein O.I. H.G. S.X.
0.50 66.9 0.90 Contig8790_at Contig8790 - - 8e-17 At5g02800 protein kinase family protein O.I. H.G. S.X.
0.50 66.9 0.91 Contig20219_at Contig20219 - - 1e-2 At3g24770 CLE41 (CLAVATA3/ESR-RELATED 41) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.46	61.0	0.89	Contig9101_s_at	Contig9101	-	-	7e+0	At5g23930	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.
0.80	92.5	0.89	Contig8340_at	Contig8340	-	-	8e-3	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.
0.71	87.1	0.89	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.
0.61	78.7	0.90	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	O.I.	H.G.	S.X.
0.57	74.9	0.90	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.
0.56	74.3	0.89	Contig9975_at	Contig9975	-	-	1e+0	At1g27435	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.90	Contig8790_at	Contig8790	-	-	8e-17	At5g02800	protein kinase family protein	O.I.	H.G.	S.X.
0.50	66.9	0.91	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	84.7	0.83	Contig17086_at	Contig17086	-	-	6e+0	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.
0.63	80.3	0.86	Contig9009_s_at	Contig9009	-	-	4e-1	At3g10116	unknown protein	O.I.	H.G.	S.X.
0.63	80.3	0.87	Contig10324_at	Contig10324	-	-	5e-33	At4g21800	QQT2 (quatre-quart2)	O.I.	H.G.	S.X.
0.60	77.3	0.86	Contig3986_s_at	Contig3986	-	-	6e-2	At4g13450	universal stress protein (USP) family protein	O.I.	H.G.	S.X.
0.59	75.8	0.86	HVSMEb0001K06r2_at	HVSMEb0001K06r2	-	-	8e-1	At5g58210	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.57	74.9	0.88	Contig3836_at	Contig3836	-	-	9e-3	At1g27540	F-box family protein	O.I.	H.G.	S.X.
0.56	74.3	0.77	Contig19608_at	Contig19608	-	-	8e-1	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.
0.56	74.3	0.83	Contig11439_at	Contig11439	-	-	2e+0	At1g06475	unknown protein	O.I.	H.G.	S.X.
0.56	74.3	0.87	Contig4118_at	Contig4118	-	-	8e-4	At3g61610	aldose 1-epimerase family protein	O.I.	H.G.	S.X.
0.55	72.0	0.83	Contig25049_at	Contig25049	-	-	2e+0	At1g20280	homeobox-leucine zipper protein-related	O.I.	H.G.	S.X.
0.53	69.7	0.85	Contig7440_at	Contig7440	-	-	1e-4	At3g02810	protein kinase family protein	O.I.	H.G.	S.X.
0.53	69.7	0.79	Contig16716_at	Contig16716	-	-	4e+0	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	O.I.	H.G.	S.X.
0.53	69.7	0.86	Contig23889_at	Contig23889	-	-	5e+0	At5g26110	ATP binding / catalytic/ protein kinase	O.I.	H.G.	S.X.
0.50	66.9	0.82	Contig13162_at	Contig13162	-	-	1e-2	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	O.I.	H.G.	S.X.
0.48	63.2	0.75	EBem09_SQ001_F20_s_at	EBem09_SQ001_F20	-	-	1e+1	At5g57560	TCH4 (Touch 4)	O.I.	H.G.	S.X.
0.48	63.2	0.81	HVSMEc0004G20r2_at	HVSMEc0004G20r2	-	-	1e+1	At5g28610	-	O.I.	H.G.	S.X.
0.46	61.0	0.86	HW08K02u_at	HW08K02u	-	-	2e-1	At5g02650	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.89	HV_CEb0006L06r2_at	HV_CEb0006L06r2	-	-	7e-2	At5g67450	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)	O.I.	H.G.	S.X.
0.44	58.9	0.81	Contig21103_at	Contig21103	-	-	1e+0	At3g07880	Rho GDP-dissociation inhibitor family protein	O.I.	H.G.	S.X.
0.42	55.2	0.74	rbaal9h21_s_at	rbaal9h21	-	-	5e-5	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.
0.40	53.1	0.74	Contig21256_at	Contig21256	-	-	7e-2	At1g08630	THA1 (Threonine Aldolase 1)	O.I.	H.G.	S.X.
0.40	53.1	0.84	Contig5146_at	Contig5146	-	-	4e-21	At1g76690	OPR2	O.I.	H.G.	S.X.
0.38	49.5	0.80	HS16K10u_at	HS16K10u	-	-	2e+1	At5g39280	ATEXPA23 (ARABIDOPSIS THALIANA EXPANSIN A23)	O.I.	H.G.	S.X.
0.38	49.5	0.82	Contig12566_at	Contig12566	-	-	9e-3	At1g08845	structural constituent of ribosome	O.I.	H.G.	S.X.
0.38	49.5	0.87	Contig17628_at	Contig17628	-	-	8e-1	At1g05960	binding	O.I.	H.G.	S.X.
0.38	49.5	0.88	Contig10950_at	Contig10950	-	-	1e-15	At4g37270	HMA1	O.I.	H.G.	S.X.
0.38	49.5	0.89	Contig1488_at	Contig1488	-	-	8e-1	At5g39320	UDP-glucose 6-dehydrogenase, putative	O.I.	H.G.	S.X.
0.36	47.1	0.86	Contig8487_s_at	Contig8487	-	-	8e-6	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.
0.36	47.1	0.88	Contig9588_at	Contig9588	-	-	5e-20	At4g11740	SAY1	O.I.	H.G.	S.X.
0.36	47.1	0.89	Contig16249_at	Contig16249	-	-	6e-4	At3g61320	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.71	Contig11479_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.82	Contig3816_s_at	Contig3816	-	-	3e-65	At1g09430	ACLA-3	O.I.	H.G.	S.X.
0.33	42.6	0.79	Contig7294_at	Contig7294	-	-	2e-13	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	O.I.	H.G.	S.X.
0.33	42.6	0.88	Contig4857_at	Contig4857	-	-	2e-1	At2g36610	ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22)	O.I.	H.G.	S.X.
0.32	40.3	0.80	Contig11999_at	Contig11999	-	-	7e-1	At2g24850	TAT3 (TYROSINE AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.
0.32	40.3	0.86	Contig14721_at	Contig14721	-	-	5e+0	At4g15670	glutaredoxin family protein	O.I.	H.G.	S.X.
0.31	38.6	0.79	Contig4115_at	Contig4115	-	-	2e+0	At2g36895	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	0.85	Contig5239_at	Contig5239	-	-	1e-9	At5g26120	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	O.I.	H.G.	S.X.
0.29	35.5	0.92	Contig18431_at	Contig18431	-	-	9e-2	At1g78530	protein kinase family protein	O.I.	H.G.	S.X.
0.27	32.1	0.77	Contig7433_s_at	Contig7433	-	-	5e-11	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	O.I.	H.G.	S.X.
0.27	32.1	0.80	Contig24429_at	Contig24429	-	-	2e+0	At5g39220	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.27	32.1	0.81	Contig21626_at	Contig21626	-	-	4e+0	At5g59440	ZEU1 (ZEUS1)	O.I.	H.G.	S.X.
0.27	32.1	0.80	rbah11m03_at	rbah11m03	-	-	3e-1	At4g31320	auxin-responsive protein, putative / small auxin up RNA (SAUR_C)	O.I.	H.G.	S.X.
0.27	32.1	0.83	Contig2717_at	Contig2717	-	-	5e-12	At5g48570	peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative	O.I.	H.G.	S.X.
0.27	32.1	0.84	Contig12042_at	Contig12042	-	-	2e+0	At5g47080	CKB1	O.I.	H.G.	S.X.
0.27	32.1	0.84	Contig9541_at	Contig9541	-	-	4e-4	At4g08520	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.
0.27	32.1	0.88	HT01D22w_at	HT01D22w	-	-	1e+0	At3g17500	F-box family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 98.6 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.8 97.0 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.8 97.0 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
4.7 96.9 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1 96.2 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9 95.8 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
3.9 95.8 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
3.6 95.3 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6 95.3 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5 95.1 GSM261074 Albina e-16 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.8	98.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.8	97.0	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.8	97.0	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.7	96.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.6	95.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5	95.1	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig9101_s_at
Gene name
Homology with Arabidopsis	Similar to At5g23930: mitochondrial transcription termination factor-related / mTERF-related (HF=7e+0)
Module size	8 genes
NF	0.63
%ile	85.3

Co-expression analysis

Gene ID Contig9101_s_at Gene name Homology with ArabidopsisSimilar to At5g23930: mitochondrial transcription termination factor-related / mTERF-related (HF=7e+0) Module size 8 genes NF 0.63 %ile 85.3

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig9101_s_at

Gene name
Homology with Arabidopsis Similar to At5g23930: mitochondrial transcription termination factor-related / mTERF-related (HF=7e+0)

Module size 8 genes

NF 0.63

%ile 85.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays