Co-expression analysis

Gene ID	Contig9101_s_at
Gene name
Homology with Arabidopsis	Similar to At5g23930: mitochondrial transcription termination factor-related / mTERF-related (HF=7e+0)
Module size	8 genes
NF	0.63
%ile	85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.89	Contig9101_s_at	Contig9101	-	-	7e+0	At5g23930	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.89	Contig8340_at	Contig8340	-	-	8e-3	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.89	Contig10972_at	Contig10972	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.90	Contig16253_at	Contig16253	-	-	7e+0	At5g48515	-	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.90	Contig11287_s_at	Contig11287	-	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.89	Contig9975_at	Contig9975	-	-	1e+0	At1g27435	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	Contig8790_at	Contig8790	-	-	8e-17	At5g02800	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.91	Contig20219_at	Contig20219	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	98.6	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.8	97.0	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.8	97.0	GSM363461	Control (C) - rep2	GSE14521	Late response to boron toxicity in barley leaves
4.7	96.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.9	95.8	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.6	95.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5	95.1	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the maize gene, Zm.1482.1.A1_a_at, orthologous to the query gene, Contig9101_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	90.8	Zm.1482.1.A1_a_at	At5g23930	hypothetical protein LOC100274856	-	4e+0	At1g27060	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.6604.1.A1_at	At5g23930	hypothetical protein LOC100280387	-	5e+0	At3g18160	peroxin-3 family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	ZmAffx.1026.1.A1_at	At5g23930	hypothetical protein LOC100193718	-	3e+0	At5g27570	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.236.1.S1_at	At5g23930	SBP-domain protein2	-	1e-2	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.1881.1.S1_at	At5g23930	-	-	5e-1	At3g17590	BSH (BUSHY GROWTH)	O.I.	H.G.	S.X.	Please select
0.37	42.3	Zm.4795.1.A1_at	At5g23930	-	-	8e-2	At3g63230	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.19266.1.A1_at	At5g23930	-	-	2e+1	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.2463.1.S1_a_at	At5g23930	hypothetical protein LOC100193981 /// hypothetical protein LOC100275076 /// hypothetical protein LOC100278476	-	6e-1	At5g64110	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.5926.1.S1_at	At5g23930	-	-	1e-8	At4g16070	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.12634.4.S1_a_at	At5g23930	60S ribosomal protein L23	-	8e-61	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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