CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9101_s_at

Gene name
Homology with Arabidopsis Similar to At5g23930: mitochondrial transcription termination factor-related / mTERF-related (HF=7e+0)

Module size 8 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 61.0 0.89 Contig9101_s_at Contig9101 - - 7e+0 At5g23930 mitochondrial transcription termination factor-related / mTERF-related O.I. H.G. S.X.
0.80 92.5 0.89 Contig8340_at Contig8340 - - 8e-3 At2g41190 amino acid transporter family protein O.I. H.G. S.X.
0.71 87.1 0.89 Contig10972_at Contig10972 - - 1e-5 At1g32500 ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) O.I. H.G. S.X.
0.61 78.7 0.90 Contig16253_at Contig16253 - - 7e+0 At5g48515 - O.I. H.G. S.X.
0.57 74.9 0.90 Contig11287_s_at Contig11287 - - 1e+0 At5g15960 KIN1 O.I. H.G. S.X.
0.56 74.3 0.89 Contig9975_at Contig9975 - - 1e+0 At1g27435 unknown protein O.I. H.G. S.X.
0.50 66.9 0.90 Contig8790_at Contig8790 - - 8e-17 At5g02800 protein kinase family protein O.I. H.G. S.X.
0.50 66.9 0.91 Contig20219_at Contig20219 - - 1e-2 At3g24770 CLE41 (CLAVATA3/ESR-RELATED 41) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.8 98.6 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.8 97.0 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.8 97.0 GSM363461 Control (C) - rep2 GSE14521 Late response to boron toxicity in barley leaves
4.7 96.9 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1 96.2 GSM431549 pathogen isolates: Polymyxa graminis - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9 95.8 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
3.9 95.8 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
3.6 95.3 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6 95.3 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5 95.1 GSM261074 Albina e-16 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.76898.1.S1_at, orthologous to the query gene, Contig9101_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 65.5 GmaAffx.76898.1.S1_at At5g23930 - - 1e-5 At4g02030 - O.I. H.G. S.X.
0.29 39.0 GmaAffx.91096.1.S1_s_at At5g23930 - - 2e-6 At2g47760 ALG3 O.I. H.G. S.X.
0.23 29.9 Gma.1084.1.S1_a_at At5g23930 - - 1e-19 At5g18230 transcription regulator NOT2/NOT3/NOT5 family protein O.I. H.G. S.X.
0.18 22.3 Gma.16781.2.S1_at At5g23930 - - 7e-2 At5g17510 unknown protein O.I. H.G. S.X.
0.12 15.1 GmaAffx.28112.1.S1_at At5g23930 - - 1e-3 At5g67530 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein O.I. H.G. S.X.
0.05 8.0 Gma.9231.2.S1_at At5g23930 - - 3e-30 At4g24550 clathrin adaptor complexes medium subunit family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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