Co-expression analysis

Gene ID Contig9075_s_at
Gene name
Homology with ArabidopsisSimilar to At5g59990: - (HF=1e-1)
Module size 6 genes
NF 0.46
%ile 64.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.92Contig9075_s_atContig9075--1e-1At5g59990-O.I.H.G.S.X.
0.5572.00.92Contig5337_atContig5337--7e-1At5g642502-nitropropane dioxygenase family / NPD familyO.I.H.G.S.X.
0.4661.00.92Contig13704_atContig13704--2e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.4053.10.92HV_CEa0003B14r2_atHV_CEa0003B14r2--8e-1At4g24026unknown proteinO.I.H.G.S.X.
0.3545.10.92Contig21096_atContig21096--5e+0At3g12930-O.I.H.G.S.X.
0.3240.30.93Contig12085_atContig12085--1e-2At5g63260zinc finger (CCCH-type) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.699.6GSM281746Genotype: Steptoe - rep2GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
14.499.5GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
12.499.4GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.199.3GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.899.2GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.499.2GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.098.9GSM281747Genotype: Steptoe - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
8.198.7GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.698.6GSM281745Genotype: Steptoe - rep1GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
7.098.4GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.21777.1.S1_a_at, orthologous to the query gene, Contig9075_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9298.5Ta.21777.1.S1_a_atAt5g59990--1e-1At2g30560glycine-rich proteinO.I.H.G.S.X.
0.3651.9Ta.21020.1.S1_atAt5g59990--3e+0At3g57710protein kinase family proteinO.I.H.G.S.X.
0.2939.2Ta.5452.1.S1_atAt5g59990--5e-1At3g02493RTFL19 (ROTUNDIFOLIA LIKE 19)O.I.H.G.S.X.
0.2939.2Ta.8258.3.S1_atAt5g59990--1e+0At3g63095-O.I.H.G.S.X.
0.2735.6Ta.10042.1.S1_atAt5g59990--2e-4At4g28780GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.2125.5Ta.14101.1.S1_x_atAt5g59990--2e-10At2g26580YAB5 (YABBY5)O.I.H.G.S.X.
0.1314.6Ta.4811.1.S1_x_atAt5g59990--1e-2At1g28590lipase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage