Co-expression analysis

Gene ID	Contig9075_s_at
Gene name
Homology with Arabidopsis	Similar to At5g59990: - (HF=1e-1)
Module size	6 genes
NF	0.46
%ile	64.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.92	Contig9075_s_at	Contig9075	-	-	1e-1	At5g59990	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.92	Contig5337_at	Contig5337	-	-	7e-1	At5g64250	2-nitropropane dioxygenase family / NPD family	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	Contig13704_at	Contig13704	-	-	2e+0	At5g56100	glycine-rich protein / oleosin	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.92	HV_CEa0003B14r2_at	HV_CEa0003B14r2	-	-	8e-1	At4g24026	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.92	Contig21096_at	Contig21096	-	-	5e+0	At3g12930	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.93	Contig12085_at	Contig12085	-	-	1e-2	At5g63260	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.6	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
14.4	99.5	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
12.4	99.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.1	99.3	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.8	99.2	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.0	98.9	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
8.1	98.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.6	98.6	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
7.0	98.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.201796.1.S1_at, orthologous to the query gene, Contig9075_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.201796.1.S1_at	At5g59990	hypothetical protein	-	5e-13	At1g03970	GBF4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.208775.1.S1_at	At5g59990	hypothetical protein	-	1e-8	At1g05410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.126460.1.S1_s_at	At5g59990	hypothetical protein	-	3e-12	At4g18120	AML3 (ARABIDOPSIS MEI2-LIKE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.219814.1.S1_at	At5g59990	serine/threonine protein kinase 1, CTR1	-	9e-25	At5g03730	CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.30001.1.S1_at	At5g59990	-	-	9e-8	At1g21630	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.86518.1.S1_at	At5g59990	hypothetical protein	-	2e-8	At4g03080	kelch repeat-containing serine/threonine phosphoesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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