Co-expression analysis

Gene ID Contig9075_s_at
Gene name
Homology with ArabidopsisSimilar to At5g59990: - (HF=1e-1)
Module size 6 genes
NF 0.46
%ile 64.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.92Contig9075_s_atContig9075--1e-1At5g59990-O.I.H.G.S.X.
0.5572.00.92Contig5337_atContig5337--7e-1At5g642502-nitropropane dioxygenase family / NPD familyO.I.H.G.S.X.
0.4661.00.92Contig13704_atContig13704--2e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.4053.10.92HV_CEa0003B14r2_atHV_CEa0003B14r2--8e-1At4g24026unknown proteinO.I.H.G.S.X.
0.3545.10.92Contig21096_atContig21096--5e+0At3g12930-O.I.H.G.S.X.
0.3240.30.93Contig12085_atContig12085--1e-2At5g63260zinc finger (CCCH-type) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.699.6GSM281746Genotype: Steptoe - rep2GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
14.499.5GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
12.499.4GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.199.3GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.899.2GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.499.2GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.098.9GSM281747Genotype: Steptoe - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
8.198.7GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.698.6GSM281745Genotype: Steptoe - rep1GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
7.098.4GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.65020.1.S1_at, orthologous to the query gene, Contig9075_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7187.8GmaAffx.65020.1.S1_atAt5g59990--4e-7At4g38680GRP2 (GLYCINE RICH PROTEIN 2)O.I.H.G.S.X.
0.3548.6Gma.15507.2.S1_atAt5g59990--7e-12At2g15790SQN (SQUINT)O.I.H.G.S.X.
0.3346.1GmaAffx.92132.1.S1_atAt5g59990--6e-55At3g04770RPSAb (40S ribosomal protein SA B)O.I.H.G.S.X.
0.2633.9GmaAffx.83845.1.S1_atAt5g59990--3e-16At4g28510ATPHB1 (PROHIBITIN 1)O.I.H.G.S.X.
0.2228.1Gma.11150.1.S1_x_atAt5g59990--3e-1At5g42635glycine-rich proteinO.I.H.G.S.X.
0.2126.6GmaAffx.27300.2.S1_atAt5g59990--4e-6At3g23620brix domain-containing proteinO.I.H.G.S.X.
0.2025.1Gma.11150.1.S1_atAt5g59990--3e-1At5g42635glycine-rich proteinO.I.H.G.S.X.
0.1822.3Gma.6296.3.S1_atAt5g59990--2e-1At4g02450glycine-rich proteinO.I.H.G.S.X.
0.1721.2GmaAffx.71557.1.S1_atAt5g59990--2e-83At3g07770ATP bindingO.I.H.G.S.X.
0.1417.5GmaAffx.91512.1.S1_s_atAt5g59990--2e-21At5g2785060S ribosomal protein L18 (RPL18C)O.I.H.G.S.X.
0.1114.2GmaAffx.92455.1.S1_atAt5g59990--5e-34At5g42790PAF1O.I.H.G.S.X.
0.0912.0Gma.6507.1.S1_s_atAt5g59990--3e-54At5g0951040S ribosomal protein S15 (RPS15D)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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