CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9075_s_at

Gene name
Homology with Arabidopsis Similar to At5g59990: - (HF=1e-1)

Module size 6 genes

NF 0.46

%ile 64.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 78.7 0.92 Contig9075_s_at Contig9075 - - 1e-1 At5g59990 - O.I. H.G. S.X.
0.55 72.0 0.92 Contig5337_at Contig5337 - - 7e-1 At5g64250 2-nitropropane dioxygenase family / NPD family O.I. H.G. S.X.
0.46 61.0 0.92 Contig13704_at Contig13704 - - 2e+0 At5g56100 glycine-rich protein / oleosin O.I. H.G. S.X.
0.40 53.1 0.92 HV_CEa0003B14r2_at HV_CEa0003B14r2 - - 8e-1 At4g24026 unknown protein O.I. H.G. S.X.
0.35 45.1 0.92 Contig21096_at Contig21096 - - 5e+0 At3g12930 - O.I. H.G. S.X.
0.32 40.3 0.93 Contig12085_at Contig12085 - - 1e-2 At5g63260 zinc finger (CCCH-type) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.6 99.6 GSM281746 Genotype: Steptoe - rep2 GSE11182 Steptoe x Morex seedling leaf comparison
14.4 99.5 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
12.4 99.4 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.1 99.3 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.8 99.2 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
10.4 99.2 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.0 98.9 GSM281747 Genotype: Steptoe - rep3 GSE11182 Steptoe x Morex seedling leaf comparison
8.1 98.7 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.6 98.6 GSM281745 Genotype: Steptoe - rep1 GSE11182 Steptoe x Morex seedling leaf comparison
7.0 98.4 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.65020.1.S1_at, orthologous to the query gene, Contig9075_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.8 GmaAffx.65020.1.S1_at At5g59990 - - 4e-7 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) O.I. H.G. S.X.
0.35 48.6 Gma.15507.2.S1_at At5g59990 - - 7e-12 At2g15790 SQN (SQUINT) O.I. H.G. S.X.
0.33 46.1 GmaAffx.92132.1.S1_at At5g59990 - - 6e-55 At3g04770 RPSAb (40S ribosomal protein SA B) O.I. H.G. S.X.
0.26 33.9 GmaAffx.83845.1.S1_at At5g59990 - - 3e-16 At4g28510 ATPHB1 (PROHIBITIN 1) O.I. H.G. S.X.
0.22 28.1 Gma.11150.1.S1_x_at At5g59990 - - 3e-1 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.21 26.6 GmaAffx.27300.2.S1_at At5g59990 - - 4e-6 At3g23620 brix domain-containing protein O.I. H.G. S.X.
0.20 25.1 Gma.11150.1.S1_at At5g59990 - - 3e-1 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.18 22.3 Gma.6296.3.S1_at At5g59990 - - 2e-1 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.17 21.2 GmaAffx.71557.1.S1_at At5g59990 - - 2e-83 At3g07770 ATP binding O.I. H.G. S.X.
0.14 17.5 GmaAffx.91512.1.S1_s_at At5g59990 - - 2e-21 At5g27850 60S ribosomal protein L18 (RPL18C) O.I. H.G. S.X.
0.11 14.2 GmaAffx.92455.1.S1_at At5g59990 - - 5e-34 At5g42790 PAF1 O.I. H.G. S.X.
0.09 12.0 Gma.6507.1.S1_s_at At5g59990 - - 3e-54 At5g09510 40S ribosomal protein S15 (RPS15D) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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