Co-expression analysis

Gene ID Contig9075_s_at
Gene name
Homology with ArabidopsisSimilar to At5g59990: - (HF=1e-1)
Module size 6 genes
NF 0.46
%ile 64.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.92Contig9075_s_atContig9075--1e-1At5g59990-O.I.H.G.S.X.
0.5572.00.92Contig5337_atContig5337--7e-1At5g642502-nitropropane dioxygenase family / NPD familyO.I.H.G.S.X.
0.4661.00.92Contig13704_atContig13704--2e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.4053.10.92HV_CEa0003B14r2_atHV_CEa0003B14r2--8e-1At4g24026unknown proteinO.I.H.G.S.X.
0.3545.10.92Contig21096_atContig21096--5e+0At3g12930-O.I.H.G.S.X.
0.3240.30.93Contig12085_atContig12085--1e-2At5g63260zinc finger (CCCH-type) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.699.6GSM281746Genotype: Steptoe - rep2GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
14.499.5GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
12.499.4GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.199.3GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.899.2GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.499.2GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.098.9GSM281747Genotype: Steptoe - rep3GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
8.198.7GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.698.6GSM281745Genotype: Steptoe - rep1GSE11182Steptoe x Morex seedling leaf comparisonLink to GEO
7.098.4GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g59990, orthologous to the query gene, Contig9075_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g59990836121-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.H.G.S.X.
0.5065.3At2g27990817343BLH8 (BEL1-LIKE HOMEODOMAIN 8)Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals.O.I.H.G.S.X.
0.3338.1At1g49830841406ethylene-responsive protein -relatedF:transcription regulator activity;P:regulation of transcription;C:nucleus;PO.I.H.G.S.X.
0.000.0At5g06250830512transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO.I.H.G.S.X.
0.000.0At3g12750820457ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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