CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9075_s_at

Gene name
Homology with Arabidopsis Similar to At5g59990: - (HF=1e-1)

Module size 6 genes

NF 0.46

%ile 64.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 78.7 0.92 Contig9075_s_at Contig9075 - - 1e-1 At5g59990 - O.I. H.G. S.X.
0.55 72.0 0.92 Contig5337_at Contig5337 - - 7e-1 At5g64250 2-nitropropane dioxygenase family / NPD family O.I. H.G. S.X.
0.46 61.0 0.92 Contig13704_at Contig13704 - - 2e+0 At5g56100 glycine-rich protein / oleosin O.I. H.G. S.X.
0.40 53.1 0.92 HV_CEa0003B14r2_at HV_CEa0003B14r2 - - 8e-1 At4g24026 unknown protein O.I. H.G. S.X.
0.35 45.1 0.92 Contig21096_at Contig21096 - - 5e+0 At3g12930 - O.I. H.G. S.X.
0.32 40.3 0.93 Contig12085_at Contig12085 - - 1e-2 At5g63260 zinc finger (CCCH-type) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.6 99.6 GSM281746 Genotype: Steptoe - rep2 GSE11182 Steptoe x Morex seedling leaf comparison
14.4 99.5 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
12.4 99.4 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.1 99.3 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.8 99.2 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
10.4 99.2 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.0 98.9 GSM281747 Genotype: Steptoe - rep3 GSE11182 Steptoe x Morex seedling leaf comparison
8.1 98.7 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.6 98.6 GSM281745 Genotype: Steptoe - rep1 GSE11182 Steptoe x Morex seedling leaf comparison
7.0 98.4 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g59990, orthologous to the query gene, Contig9075_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g59990 836121 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.
0.50 65.3 At2g27990 817343 BLH8 (BEL1-LIKE HOMEODOMAIN 8) Encodes a BEL1-like homeobox gene that functions together with PNY in meristem maintenance by regulating the allocation process during vegetative and reproductive development. Both gene products are required for the competence of the SAM to respond properly to floral inductive signals. O.I. H.G. S.X.
0.33 38.1 At1g49830 841406 ethylene-responsive protein -related F:transcription regulator activity;P:regulation of transcription;C:nucleus;P O.I. H.G. S.X.
0.00 0.0 At5g06250 830512 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. H.G. S.X.
0.00 0.0 At3g12750 820457 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR) A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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