Co-expression analysis

Gene ID	Contig9029_at
Gene name
Homology with Arabidopsis	Similar to At2g40890: CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) (HF=4e-8)
Module size	6 genes
NF	0.40
%ile	54.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig9029_at	Contig9029	-	-	4e-8	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	Contig3178_s_at	Contig3178	-	-	5e-35	At2g27020	PAG1	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig8614_at	Contig8614	-	-	1e-14	At2g18750	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig7686_at	Contig7686	-	-	2e-1	At1g60650	glycine-rich RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig7219_x_at	Contig7219	-	-	5e-1	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig9219_at	Contig9219	-	-	1e+1	At5g65130	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.9	97.1	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.0	96.0	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.9	95.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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