Co-expression analysis

Gene ID	Contig9028_at
Gene name
Homology with Arabidopsis	Similar to At2g44680: CKB4 (CASEIN KINASE II BETA SUBUNIT 4) (HF=5e-45)
Module size	18 genes
NF	0.38
%ile	51.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	74.9	0.65	Contig9028_at	Contig9028	-	-	5e-45	At2g44680	CKB4 (CASEIN KINASE II BETA SUBUNIT 4)	O.I.	H.G.	S.X.	Please select
0.54	70.3	0.89	EBro02_SQ001_B17_at	EBro02_SQ001_B17	-	-	3e+0	At3g05540	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.85	Contig16517_at	Contig16517	-	-	1e-1	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.90	Contig11904_at	Contig11904	-	-	2e+0	At1g03620	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.83	Contig21770_at	Contig21770	-	-	1e+0	At1g13270	MAP1C (METHIONINE AMINOPEPTIDASE 1B)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig25606_at	Contig25606	-	-	2e+0	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.83	Contig2004_s_at	Contig2004	-	-	9e-5	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.84	Contig17992_at	Contig17992	-	-	3e+0	At2g27420	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.93	Contig23903_at	Contig23903	-	-	1e+0	At2g30766	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.86	Contig23189_at	Contig23189	-	-	1e+0	At1g49220	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	HU13H10u_at	HU13H10u	-	-	4e+0	At5g19530	ACL5 (ACAULIS 5)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.87	Contig19616_at	Contig19616	-	-	2e-10	At2g43850	ankyrin protein kinase, putative (APK1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig7669_s_at	Contig7669	-	-	1e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.83	Contig19571_at	Contig19571	-	-	2e-3	At5g22200	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.83	HVSMEk0004F18f2_s_at	HVSMEk0004F18f2	-	-	3e-1	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig7671_at	Contig7671	-	-	4e-34	At2g27200	GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.88	Contig1072_s_at	Contig1072	-	-	2e-133	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.85	EBro03_SQ008_J07_at	EBro03_SQ008_J07	-	-	8e-1	At5g19240	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	98.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.4	98.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.6	98.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.2	98.5	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.0	96.0	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.6	95.3	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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