Co-expression analysis

Gene ID	Contig9022_at
Gene name
Homology with Arabidopsis	Similar to At5g37680: ATARLA1A (ADP-ribosylation factor-like A1A) (HF=2e-55)
Module size	17 genes
NF	0.33
%ile	43.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	0.94	Contig9022_at	Contig9022	-	-	2e-55	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig642_at	Contig642	-	-	4e-5	At4g08930	ATAPRL6 (APR-like 6)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig662_at	Contig662	-	-	1e-1	At5g22240	OFP10	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig11475_at	Contig11475	-	-	1e-59	At3g11540	SPY (SPINDLY)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig8973_at	Contig8973	-	-	5e-10	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig5361_at	Contig5361	-	-	3e+0	At4g29103	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig3421_at	Contig3421	-	-	7e-69	At2g23080	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig10945_at	Contig10945	-	-	3e+0	At5g24110	WRKY30	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig9780_at	Contig9780	-	-	8e-8	At5g11040	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	rbah36l17_s_at	rbah36l17	-	-	7e-30	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig1660_at	Contig1660	-	-	6e-27	At4g15415	ATB' GAMMA	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.97	Contig6963_at	Contig6963	-	-	5e-11	At5g02240	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig10038_at	Contig10038	-	-	3e-15	At1g68410	protein phosphatase 2C-related / PP2C-related	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig5347_at	Contig5347	-	-	1e-3	At1g17770	SUVH7 (SU(VAR)3-9 HOMOLOG 7)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig6527_at	Contig6527	-	-	8e-1	At3g07350	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig3741_s_at	Contig3741	-	-	1e-6	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	HVSMEi0002I06r2_x_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.3	94.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.0	93.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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