Co-expression analysis

Gene ID	Contig901_x_at
Gene name
Homology with Arabidopsis	Similar to At1g56070: LOS1 (HF=0)
Module size	6 genes
NF	0.24
%ile	30.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.95	Contig901_x_at	Contig901	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	HD08D07r_s_at	HD08D07r	-	-	9e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig7278_at	Contig7278	-	-	7e-2	At2g45980	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig9154_at	Contig9154	-	-	7e-1	At4g39340	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig6874_at	Contig6874	-	-	8e+0	At5g14360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.96	Contig10064_at	Contig10064	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.9	98.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.8	97.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.5	97.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.2	96.3	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM363465	5 mM B(OH)3 treatment (5B) - rep3	GSE14521	Late response to boron toxicity in barley leaves
3.2	94.3	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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