CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9016_at

Gene name
Homology with Arabidopsis Similar to At5g22070: unknown protein (HF=9e-7)

Module size 6 genes

NF 0.53

%ile 74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 75.8 0.94 Contig9016_at Contig9016 - - 9e-7 At5g22070 unknown protein O.I. H.G. S.X.
0.77 90.8 0.93 Contig6618_at Contig6618 - - 4e-1 At5g51180 unknown protein O.I. H.G. S.X.
0.77 90.8 0.94 Contig4157_at Contig4157 - - 1e-25 At1g60780 HAP13 (HAPLESS 13) O.I. H.G. S.X.
0.46 61.0 0.94 Contig1356_s_at Contig1356 - - 4e+0 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.38 49.5 0.94 Contig6619_at Contig6619 - - 2e-3 At5g51180 unknown protein O.I. H.G. S.X.
0.25 28.9 0.94 Contig5753_at Contig5753 - - 3e-1 At1g04501 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.92	HVSMEm0003C21r2_at	HVSMEm0003C21r2	-	-	5e+0	At5g23470	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.
0.55	72.0	0.91	Contig195_at	Contig195	-	-	2e-19	At2g40205	60S ribosomal protein L41 (RPL41C)	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig15345_at	Contig15345	-	-	7e-3	At5g05070	zinc ion binding	O.I.	H.G.	S.X.
0.47	62.2	0.91	Contig19589_at	Contig19589	-	-	2e+0	At3g25580	thioredoxin-related	O.I.	H.G.	S.X.
0.44	58.9	0.94	HB14O12r_at	HB14O12r	-	-	4e+0	At5g24316	proline-rich family protein	O.I.	H.G.	S.X.
0.40	53.1	0.92	Contig10076_at	Contig10076	-	-	5e-15	At4g13020	MHK	O.I.	H.G.	S.X.
0.38	49.5	0.93	Contig13231_at	Contig13231	-	-	5e-1	At3g32896	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.96	HVSMEm0007E01r2_at	HVSMEm0007E01r2	-	-	1e+0	At2g36355	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.88	Contig15251_at	Contig15251	-	-	3e+0	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.
0.33	42.6	0.90	Contig17670_at	Contig17670	-	-	3e+0	At5g48420	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.92	HA10J02u_at	HA10J02u	-	-	1e+0	At2g03610	F-box family protein	O.I.	H.G.	S.X.
0.31	38.6	0.93	Contig13865_at	Contig13865	-	-	2e-10	At3g10220	tubulin folding cofactor B	O.I.	H.G.	S.X.
0.27	32.1	0.91	Contig3168_at	Contig3168	-	-	1e-24	At5g60860	AtRABA1f (Arabidopsis Rab GTPase homolog A1f)	O.I.	H.G.	S.X.
0.26	30.4	0.88	Contig6984_s_at	Contig6984	-	-	2e-4	At4g31580	SRZ-22	O.I.	H.G.	S.X.
0.25	28.9	0.91	Contig8138_s_at	Contig8138	-	-	9e-8	At4g10030	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.7 99.2 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4 99.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.9 98.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.6 97.7 GSM398255 Martin_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.3 97.4 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3 97.4 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.0 97.2 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3 96.4 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM398260 Martin_5d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0 96.0 GSM398257 Martin_3d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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