Co-expression analysis

Gene ID	Contig9016_at
Gene name
Homology with Arabidopsis	Similar to At5g22070: unknown protein (HF=9e-7)
Module size	6 genes
NF	0.53
%ile	74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.94	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.93	Contig6618_at	Contig6618	-	-	4e-1	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.94	Contig4157_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig6619_at	Contig6619	-	-	2e-3	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig5753_at	Contig5753	-	-	3e-1	At1g04501	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.9	98.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.6	97.7	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.3	97.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.0	97.2	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3	96.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0	96.0	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the maize gene, Zm.6225.1.A1_at, orthologous to the query gene, Contig9016_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.1	Zm.6225.1.A1_at	At5g22070	hypothetical protein LOC100274530	-	1e-10	At1g23290	RPL27AB	O.I.	H.G.	S.X.	Please select
0.91	99.0	ZmAffx.830.1.A1_at	At5g22070	-	-	6e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.19280.1.S1_at	At5g22070	hypothetical protein LOC100276261	-	4e-6	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	ZmAffx.831.1.A1_at	At5g22070	Hypothetical protein LOC100191667	-	2e-1	At1g21900	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.8806.1.A1_at	At5g22070	-	-	2e+1	At5g35640	-	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.482.1.S1_at	At5g22070	bifunctional dihydrofolate reductase-thymidylate synthase	-	1e-50	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.12546.2.A1_a_at	At5g22070	ATP binding protein	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.35	38.9	ZmAffx.716.1.S1_at	At5g22070	transparent testa 12 protein	-	2e-1	At4g03240	FH (FRATAXIN HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.9386.1.A1_at	At5g22070	hypothetical protein LOC100275351	-	2e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.9635.1.A1_at	At5g22070	-	-	2e+1	At5g55940	emb2731 (embryo defective 2731)	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.15605.1.S1_at	At5g22070	isopenicillin N epimerase	-	2e-2	At3g62130	epimerase-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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