CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9016_at

Gene name
Homology with Arabidopsis Similar to At5g22070: unknown protein (HF=9e-7)

Module size 6 genes

NF 0.53

%ile 74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 75.8 0.94 Contig9016_at Contig9016 - - 9e-7 At5g22070 unknown protein O.I. H.G. S.X.
0.77 90.8 0.93 Contig6618_at Contig6618 - - 4e-1 At5g51180 unknown protein O.I. H.G. S.X.
0.77 90.8 0.94 Contig4157_at Contig4157 - - 1e-25 At1g60780 HAP13 (HAPLESS 13) O.I. H.G. S.X.
0.46 61.0 0.94 Contig1356_s_at Contig1356 - - 4e+0 At4g02450 glycine-rich protein O.I. H.G. S.X.
0.38 49.5 0.94 Contig6619_at Contig6619 - - 2e-3 At5g51180 unknown protein O.I. H.G. S.X.
0.25 28.9 0.94 Contig5753_at Contig5753 - - 3e-1 At1g04501 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.7 99.2 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4 99.2 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.9 98.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.6 97.7 GSM398255 Martin_3d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.3 97.4 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3 97.4 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.0 97.2 GSM398256 Martin_3d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3 96.4 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1 96.2 GSM398260 Martin_5d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0 96.0 GSM398257 Martin_3d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the rice gene, Os07g0158800, orthologous to the query gene, Contig9016_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 Os07g0158800 At5g22070 - Arabidopsis protein of unknown function DUF266family protein 3e-3 At5g22070 unknown protein O.I. H.G. S.X.
0.60 79.7 Os02g0810900 At5g22070 - NAC-domain containing protein 21/22 (ANAC021)(ANAC022). Splice isoform 2 2e-1 At4g28530 anac074 (Arabidopsis NAC domain containing protein 74) O.I. H.G. S.X.
0.47 62.3 Os11g0241200 At5g22070 - Hypothetical protein 3e-1 At5g54585 unknown protein O.I. H.G. S.X.
0.42 53.9 Os01g0972200 At5g22070 - Zinc transporter 2 precursor (ZRT/IRT-like protein2) 7e-4 At5g59520 ZIP2 O.I. H.G. S.X.
0.31 34.5 Os07g0645300 At5g22070 - Protein of unknown function DUF679 family protein 2e+0 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.29 31.1 Os02g0572600 At5g22070 - - 1e-2 At5g23120 HCF136 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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