Co-expression analysis

Gene ID	Contig9016_at
Gene name
Homology with Arabidopsis	Similar to At5g22070: unknown protein (HF=9e-7)
Module size	6 genes
NF	0.53
%ile	74.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.94	Contig9016_at	Contig9016	-	-	9e-7	At5g22070	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.93	Contig6618_at	Contig6618	-	-	4e-1	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.94	Contig4157_at	Contig4157	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig1356_s_at	Contig1356	-	-	4e+0	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig6619_at	Contig6619	-	-	2e-3	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig5753_at	Contig5753	-	-	3e-1	At1g04501	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.4	99.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.9	98.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.6	97.7	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.3	97.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.3	97.4	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.0	97.2	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3	96.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0	96.0	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the soybean gene, Gma.7553.1.S1_at, orthologous to the query gene, Contig9016_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.1	Gma.7553.1.S1_at	At5g22070	-	-	7e-9	At5g22070	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	Gma.4939.1.S1_at	At5g22070	-	-	7e-9	At5g02850	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.17428.1.S1_s_at	At5g22070	-	-	3e-1	At3g21055	PSBTN (photosystem II subunit T)	O.I.	H.G.	S.X.	Please select
0.05	8.0	Gma.3089.2.S1_at	At5g22070	-	-	4e-35	At4g19490	protein binding	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.16019.1.S1_at	At5g22070	-	-	3e-11	At5g13390	NEF1 (NO EXINE FORMATION 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.80247.2.S1_at	At5g22070	-	-	2e-11	At2g41140	CRK1 (CDPK-RELATED KINASE 1)	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.17425.1.S1_at	At5g22070	-	-	3e-69	At3g08550	KOB1 (KOBITO)	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.86463.1.S1_at	At5g22070	-	-	2e-33	At5g49720	ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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