Co-expression analysis

Gene ID Contig9006_at
Gene name
Homology with ArabidopsisSimilar to At1g09850: XBCP3 (xylem bark cysteine peptidase 3) (HF=6e-5)
Module size 9 genes
NF 0.08
%ile 10.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4863.20.85Contig9006_atContig9006--6e-5At1g09850XBCP3 (xylem bark cysteine peptidase 3)O.I.H.G.S.X.
0.3342.60.87HD01O20w_atHD01O20w--5e+0At4g22520protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2935.50.89HU13P05r_atHU13P05r--1e+0At3g61880CYP78A9 (CYTOCHROME P450 78A9)O.I.H.G.S.X.
0.1919.60.88HVSMEb0014K09r2_s_atHVSMEb0014K09r2--2e+0At4g21215unknown proteinO.I.H.G.S.X.
0.1615.30.86Contig21959_atContig21959--1e+0At1g12663-O.I.H.G.S.X.
0.097.40.87HT12C11u_atHT12C11u--1e+0At2g01870unknown proteinO.I.H.G.S.X.
0.054.10.87HS18B10u_x_atHS18B10u--7e+0At4g01750RGXT2 (rhamnogalacturonan xylosyltransferase 2)O.I.H.G.S.X.
0.043.40.88HVSMEm0003G18r2_atHVSMEm0003G18r2--9e-1At1g09665Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.032.60.86Contig13558_atContig13558--2e-1At2g36270ABI5 (ABA INSENSITIVE 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.8GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
8.198.7GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.096.0GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.692.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
2.692.3GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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