Co-expression analysis

Gene ID	Contig9005_at
Gene name
Homology with Arabidopsis	Similar to At3g05280: integral membrane Yip1 family protein (HF=1e-14)
Module size	16 genes
NF	0.35
%ile	46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	81.4	0.94	Contig9005_at	Contig9005	-	-	1e-14	At3g05280	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig14361_at	Contig14361	-	-	2e-1	At2g11005	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig1159_s_at	Contig1159	-	-	1e-4	At1g62540	FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.97	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig8331_s_at	Contig8331	-	-	2e-5	At1g55255	-	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig6232_at	Contig6232	-	-	8e-1	At2g01720	ribophorin I family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig3532_at	Contig3532	-	-	8e+0	At4g32605	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig11766_at	Contig11766	-	-	1e-2	At5g50400	PAP27 (PURPLE ACID PHOSPHATASE 27)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig7886_at	Contig7886	-	-	8e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	97.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.3	94.6	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.4	91.4	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage